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Genome Information for Homo sapiens
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1 additional project is a component of the Discovery of the p53 targetome in MCF7 cells from RNA-seq and ChIP-seq data.
RNA-seq and ChIP-seq on MCF-7 breast cancer cell line upon activation of p53 by the non-genotoxic small molecule Nutlin-3a
Overall design: ChIP-seq on p53 in MCF7 with Nutlin-3a stimulation (S) in triplicate, and the control (input), in stimulated and non stimulated, using illumina HiSeq 2000
| Accession | PRJNA203360; GEO: GSE47041 |
| Data Type | Epigenomics |
| Scope | Multiisolate |
| Organism | Homo sapiens[Taxonomy ID: 9606] Eukaryota; Metazoa; Chordata; Craniata; Vertebrata; Euteleostomi; Mammalia; Eutheria; Euarchontoglires; Primates; Haplorrhini; Catarrhini; Hominidae; Homo; Homo sapiens |
| Publications | Janky R et al., "iRegulon: from a gene list to a gene regulatory network using large motif and track collections.", PLoS Comput Biol, 2014 Jul;10(7):e1003731 |
| Submission | Registration date: 17-May-2013
Laboratory of Computational Biology, Department of Human Genetics, KU Leuven |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
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| Sequence data |
| SRA Experiments | 3 |
| Publications |
| PubMed | 1 |
| PMC | 1 |
| Other datasets |
| BioSample | 3 |
| GEO DataSets | 1 |