This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA130381; GEO: GSE23958 |
| Type | Umbrella project |
| Publications | Hezroni H et al., "Pluripotency-related, valproic acid (VPA)-induced genome-wide histone H3 lysine 9 (H3K9) acetylation patterns in embryonic stem cells.", J Biol Chem, 2011 Oct 14;286(41):35977-35988 |
| Submission | Registration date: 17-Sep-2011
Stem cell chromatin, Genetics, The Hebrew University of Jerusalem |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 4 |
| Publications |
| PubMed | 2 |
| PMC | 2 |
| Other datasets |
| BioSample | 4 |
| GEO DataSets | 4 |
GEO Data Details| Parameter | Value |
|---|
| Data volume, Spots | 355560 |
| Data volume, Processed Mbytes | 7 |
| Data volume, Supplementary Mbytes | 638 |
| Parameter | Value |
|---|
| Data volume, Gbases | 6 |
| Data volume, Mbytes | 5622 |
This project encompasses the following 3 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA133743 | Mus musculus | Genome-wide H3K9 acetylation state before and after VPA treatment (Stem cell chromatin, Genetics,...) |
|
| Transcriptome or Gene expression | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA133197 | Mus musculus | Gene expression profiles of E14 ESCs treated with low levels of HDAC inhibitors for 16 hrs (Stem cell chromatin, Genetics,...) | | PRJNA133199 | Mus musculus | Gene expression profiles of E14 ESCs treated with low levels of the HDAC inhibitor VPA for 4 hrs (Stem cell chromatin, Genetics,...) |
|