ID 1020068 - BioProject

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Accession: PRJNA1020068 ID: 1020068

Monitoring Antimicrobial Resistance in Bovine Feces from Farms across Lebanon: Sequencing and Genomic Surveillance under One Health

The aim of this study is to perform an in-depth surveillance program of antimicrobial resistance in bovine feces in order to obtain a clearer picture on the genomic epidemiology of resistance determinants circulating in Lebanon.

Accession	PRJNA1020068
Data Type	Genome sequencing and assembly
Scope	Multispecies
Submission	Registration date: 22-Sep-2023 Lebanese American University- Microbial Pathogenomics Lab

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	61
Other datasets
BioSample	64
Assembly	62

Assembly details:

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Assembly level

Number of Assemblies

Contig

Total

62
62

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_036668755.1	JAZEVT000000000	SAMN37512205	ESBL13	Achromobacter sp. ESBL13
GCA_036668815.1	JAZEVS000000000	SAMN37512206	ESBL14	Acinetobacter sp. ESBL14
GCA_038378125.1	JBBYWY000000000	SAMN40922762	ESBL50	Citrobacter portucalensis
GCA_038405375.1	JBBYWV000000000	SAMN40922765	ESBL53	Citrobacter sedlakii
GCA_036669035.1	JAZEVZ000000000	SAMN37512198	ESBL3	Citrobacter sp. ESBL3
GCA_038378185.1	JBBYXD000000000	SAMN40922757	ESBL39	Ectopseudomonas mendocina
GCA_041679625.1	JBGORN000000000	SAMN41791601	ESBL7	Enterobacter cloacae complex sp. ESBL7
GCA_038378105.1	JBBYWW000000000	SAMN40922764	ESBL52	Enterobacter hormaechei
GCA_041020275.1	JBEJHA000000000	SAMN41791602	ESBL27	Escherichia coli
GCA_041020265.1	JBEJGZ000000000	SAMN41791603	ESBL28	Escherichia coli
GCA_038374715.1	JBBYWJ000000000	SAMN40922777	ESBL68	Escherichia coli
GCA_038374705.1	JBBYWG000000000	SAMN40922780	ESBL73	Escherichia coli
GCA_038374675.1	JBBYWF000000000	SAMN40922781	ESBL74	Escherichia coli
GCA_038374665.1	JBBYWE000000000	SAMN40922782	ESBL75	Escherichia coli
GCA_038374765.1	JBBYWI000000000	SAMN40922778	ESBL70	Escherichia coli
GCA_038374755.1	JBBYWH000000000	SAMN40922779	ESBL72	Escherichia coli
GCA_038378035.1	JBBYWS000000000	SAMN40922768	ESBL57	Escherichia coli
GCA_038378085.1	JBBYWU000000000	SAMN40922766	ESBL54	Escherichia coli
GCA_038378165.1	JBBYXA000000000	SAMN40922760	ESBL43	Escherichia coli
GCA_038378195.1	JBBYXB000000000	SAMN40922759	ESBL42	Escherichia coli
GCA_038378205.1	JBBYXC000000000	SAMN40922758	ESBL40	Escherichia coli
GCA_038378265.1	JBBYXF000000000	SAMN40922755	ESBL36	Escherichia coli
GCA_038378005.1	JBBYWP000000000	SAMN40922771	ESBL60	Escherichia coli
GCA_038377975.1	JBBYWQ000000000	SAMN40922770	ESBL59	Escherichia coli
GCA_038377965.1	JBBYWO000000000	SAMN40922772	ESBL62	Escherichia coli
GCA_038377945.1	JBBYWN000000000	SAMN40922773	ESBL63	Escherichia coli
GCA_038377925.1	JBBYWM000000000	SAMN40922774	ESBL65	Escherichia coli
GCA_038377905.1	JBBYWK000000000	SAMN40922776	ESBL67	Escherichia coli
GCA_038377885.1	JBBYWL000000000	SAMN40922775	ESBL66	Escherichia coli
GCA_036668235.1	JAZEVD000000000	SAMN37512227	ESBL35	Escherichia coli
GCA_036668435.1	JAZEVM000000000	SAMN37512216	ESBL24	Escherichia coli
GCA_036668415.1	JAZEVL000000000	SAMN37512217	ESBL25	Escherichia coli
GCA_036668395.1	JAZEVK000000000	SAMN37512218	ESBL26	Escherichia coli
GCA_036668735.1	JAZEVU000000000	SAMN37512203	ESBL11	Escherichia coli
GCA_036668355.1	JAZEVI000000000	SAMN37512222	ESBL30	Escherichia coli
GCA_036668335.1	JAZEVH000000000	SAMN37512223	ESBL31	Escherichia coli
GCA_036668315.1	JAZEVG000000000	SAMN37512224	ESBL32	Escherichia coli
GCA_036668295.1	JAZEVF000000000	SAMN37512225	ESBL33	Escherichia coli
GCA_036668275.1	JAZEVE000000000	SAMN37512226	ESBL34	Escherichia coli
GCA_036668635.1	JAZEVR000000000	SAMN37512211	ESBL19	Escherichia coli
GCA_036668615.1	JAZEVQ000000000	SAMN37512212	ESBL20	Escherichia coli
GCA_036668595.1	JAZEVN000000000	SAMN37512215	ESBL23	Escherichia coli
GCA_036668555.1	JAZEVP000000000	SAMN37512213	ESBL21	Escherichia coli
GCA_036668575.1	JAZEVO000000000	SAMN37512214	ESBL22	Escherichia coli
GCA_036668935.1	JAZEVX000000000	SAMN37512200	ESBL5	Escherichia coli
GCA_036668975.1	JAZEVY000000000	SAMN37512199	ESBL4	Klebsiella grimontii
GCA_038378065.1	JBBYWT000000000	SAMN40922767	ESBL56	Klebsiella michiganensis
GCA_038378245.1	JBBYXE000000000	SAMN40922756	ESBL37	Klebsiella pneumoniae
GCA_037079995.1	JAZKJW000000000	SAMN37512210	ESBL18	Pseudomonas atacamensis
GCA_037079955.1	JAZKJY000000000	SAMN37512208	ESBL16	Pseudomonas atacamensis
GCA_037079975.1	JAZKJX000000000	SAMN37512209	ESBL17	Pseudomonas granadensis
GCA_036668835.1	JAZEVW000000000	SAMN37512201	ESBL8	Pseudomonas koreensis
GCA_037080015.1	JAZKJZ000000000	SAMN37512207	ESBL15	Pseudomonas monsensis
GCA_038378025.1	JBBYWR000000000	SAMN40922769	ESBL58	Pseudomonas putida
GCA_036669055.1	JAZEWB000000000	SAMN37512196	ESBL1	Pseudomonas sp. ESBL1
GCA_036668955.1	JAZEWA000000000	SAMN37512197	ESBL2	Pseudomonas sp. ESBL2
GCA_036668715.1	JAZEVV000000000	SAMN37512202	ESBL9	Pseudomonas sp. ESBL9
GCA_037080075.1	JAZKKA000000000	SAMN37512204	ESBL12	Rahnella perminowiae
GCA_036668375.1	JAZEVJ000000000	SAMN37512221	ESBL29	Serratia fonticola
GCA_038405395.1	JBBYWZ000000000	SAMN40922761	ESBL45	Stenotrophomonas geniculata
GCA_038378095.1	JBBYWX000000000	SAMN40922763	ESBL51	Stenotrophomonas maltophilia
GCA_041020305.1	JBEJHB000000000	SAMN41791600	ESBL6	Stenotrophomonas maltophilia

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Monitoring Antimicrobial Resistance in Bovine Feces from Farms across Lebanon: Sequencing and Genomic Surveillance under One Health

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