Escherichia coli (ID 573422) - BioProject

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Accession: PRJDB8147 ID: 573422

Escherichia coli

Comparative genomic analysis of Shiga-toxin producing Escherichia coli

See Genome Information for Escherichia coli

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9223 additional projects are related by organism.

To reveal a phylogenetic overview of Shiga-toxin producing Escherichia coli (STEC), we sequenced the STEC strains isolated from patients with or without symptoms, foods, animals, and environmental sources mainly in Japan and performed whole genome sequence-based phylogenetic analysis.

Accession	PRJDB8147
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadati; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Nakamura K et al., "Differential dynamics and impacts of prophages and plasmids on the pangenome and virulence factor repertoires of Shiga toxin-producing Escherichia coli O145:H28.", Microb Genom, 2020 Jan;6(1)
Submission	Registration date: 20-Sep-2019 Department of Bacteriology, Faculty of Medical Sciences, Kyushu University
Relevance	Evolution

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	30163
WGS master	103
Genomic DNA	46
SRA Experiments	350
Protein Sequences	606691
Publications
PubMed	1
PMC	1
Other datasets
BioSample	342
Assembly	119

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Scaffold

Total

16
103
119

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_008635315.1	BJRP00000000		SAMD00166663	150317	Escherichia coli O145:H28
GCA_008635295.1	BJRO00000000		SAMD00166662	150316	Escherichia coli O145:H28
GCA_008635245.1	BJRN00000000		SAMD00166661	150222	Escherichia coli O145:H28
GCA_008635225.1	BJRM00000000		SAMD00166660	150149	Escherichia coli O145:H28
GCA_008635205.1	BJRL00000000		SAMD00166659	150034	Escherichia coli O145:H28
GCA_008635185.1	BJRK00000000		SAMD00166658	142664	Escherichia coli O145:H28
GCA_008635165.1	BJRJ00000000		SAMD00166657	142612	Escherichia coli O145:H28
GCA_008635145.1	BJRI00000000		SAMD00166656	142527	Escherichia coli O145:H28
GCA_008635125.1	BJRH00000000		SAMD00166655	142526	Escherichia coli O145:H28
GCA_008635105.1	BJRG00000000		SAMD00166654	142370	Escherichia coli O145:H34
GCA_008635085.1	BJRF00000000		SAMD00166653	142245	Escherichia coli O145:H28
GCA_008635065.1	BJRE00000000		SAMD00166652	142179	Escherichia coli O145:H28
GCA_008635045.1	BJRD00000000		SAMD00166651	142095	Escherichia coli O145:H28
GCA_008635025.1	BJRC00000000		SAMD00166650	95	Escherichia coli O145:H28
GCA_008635005.1	BJRB00000000		SAMD00166649	141500	Escherichia coli O145:H28
GCA_008634985.1	BJRA00000000		SAMD00166648	140166	Escherichia coli O145:H28
GCA_008634965.1	BJQZ00000000		SAMD00166647	141262	Escherichia coli O145:H28
GCA_008634945.1	BJQY00000000		SAMD00166646	141115	Escherichia coli O145:H28
GCA_008634925.1	BJQX00000000		SAMD00166645	140933	Escherichia coli O145:H28
GCA_008634905.1	BJQW00000000		SAMD00166644	14040	Escherichia coli O145:H28
GCA_008634885.1	BJQV00000000		SAMD00166643	140760	Escherichia coli O145:H28
GCA_008634575.1	BJQQ00000000		SAMD00166638	PV11-77	Escherichia coli O145:H28
GCA_008634525.1	BJQP00000000		SAMD00166637	PV11-59	Escherichia coli O145:H28
GCA_008634505.1	BJQO00000000		SAMD00166636	PV11-35	Escherichia coli O145:H28
GCA_008634485.1	BJQN00000000		SAMD00166635	699	Escherichia coli O145:H28
GCA_008634465.1	BJQM00000000		SAMD00166634	499	Escherichia coli O145:H28
GCA_008634445.1	BJQL00000000		SAMD00166633	132418	Escherichia coli O145:H28
GCA_008634425.1	BJQK00000000		SAMD00166632	131990	Escherichia coli O145:H28
GCA_008634405.1	BJQJ00000000		SAMD00166631	131719	Escherichia coli O145:H28
GCA_008634385.1	BJQI00000000		SAMD00166630	131713	Escherichia coli O145:H28
GCA_008634365.1	BJQH00000000		SAMD00166629	130296	Escherichia coli O145:H28
GCA_008634345.1	BJQG00000000		SAMD00166628	122200	Escherichia coli O145:H28
GCA_008634325.1	BJQF00000000		SAMD00166627	121427	Escherichia coli O145:H28
GCA_008634305.1	BJQE00000000		SAMD00166626	120517	Escherichia coli O145:H28
GCA_008634285.1	BJQD00000000		SAMD00166625	120412	Escherichia coli O145:H28
GCA_008634265.1	BJQC00000000		SAMD00166624	112991	Escherichia coli O145:H28
GCA_008634245.1	BJQB00000000		SAMD00166623	112808	Escherichia coli O145:H28
GCA_008634225.1	BJQA00000000		SAMD00166622	112716	Escherichia coli O145:H28
GCA_008634205.1	BJPZ00000000		SAMD00166621	112312	Escherichia coli O145:H28
GCA_008634185.1	BJPY00000000		SAMD00166620	111698	Escherichia coli O145:H28
GCA_008634165.1	BJPX00000000		SAMD00166619	111430	Escherichia coli O145:H28
GCA_008634145.1	BJPW00000000		SAMD00166618	110509	Escherichia coli O145:H28
GCA_008634125.1	BJPV00000000		SAMD00166617	12E129	Escherichia coli O145:H28
GCA_008634065.1	BJPT00000000		SAMD00166615	12E109	Escherichia coli O145:H28
GCA_008635965.1	BJST00000000		SAMD00166693	162442	Escherichia coli O145:H28
GCA_008635935.1	BJSS00000000		SAMD00166692	162405	Escherichia coli O145:H28
GCA_008635915.1	BJSR00000000		SAMD00166691	161867	Escherichia coli O145:H25
GCA_008635895.1	BJSQ00000000		SAMD00166690	161676	Escherichia coli O145:H28
GCA_008635875.1	BJSP00000000		SAMD00166689	161318	Escherichia coli O145:H28
GCA_008635855.1	BJSO00000000		SAMD00166688	161161	Escherichia coli O145:H28
GCA_008635835.1	BJSN00000000		SAMD00166687	16002	Escherichia coli O145:H28
GCA_008635765.1	BJSL00000000		SAMD00166685	160873	Escherichia coli O145:H28
GCA_008635745.1	BJSK00000000		SAMD00166684	160674	Escherichia coli O145:H28
GCA_008635725.1	BJSJ00000000		SAMD00166683	160509	Escherichia coli O145:H28
GCA_008635705.1	BJSI00000000		SAMD00166682	KIH15-140	Escherichia coli O145:H28
GCA_008635685.1	BJSH00000000		SAMD00166681	160018	Escherichia coli O145:H28
GCA_008635665.1	BJSG00000000		SAMD00166680	153152	Escherichia coli O145:H28
GCA_008635645.1	BJSF00000000		SAMD00166679	152767	Escherichia coli O145:H28
GCA_008635625.1	BJSE00000000		SAMD00166678	152517	Escherichia coli O145:H28
GCA_008635605.1	BJSD00000000		SAMD00166677	152489	Escherichia coli O145:H28
GCA_008635585.1	BJSC00000000		SAMD00166676	EC3734	Escherichia coli O145:H28
GCA_008635565.1	BJSB00000000		SAMD00166675	152282	Escherichia coli O145:H28
GCA_008635545.1	BJSA00000000		SAMD00166674	14744	Escherichia coli O145:H28
GCA_008635525.1	BJRZ00000000		SAMD00166673	151836	Escherichia coli O145:H28
GCA_008635505.1	BJRY00000000		SAMD00166672	151747	Escherichia coli O145:H28
GCA_008635485.1	BJRX00000000		SAMD00166671	151733	Escherichia coli O145:H28
GCA_008635465.1	BJRW00000000		SAMD00166670	H27V05	Escherichia coli O145:H28
GCA_008635445.1	BJRV00000000		SAMD00166669	151349	Escherichia coli O145:H28
GCA_008635425.1	BJRU00000000		SAMD00166668	151109	Escherichia coli O145:H28
GCA_008635405.1	BJRT00000000		SAMD00166667	150952	Escherichia coli O145:H28
GCA_008635385.1	BJRS00000000		SAMD00166666	150814	Escherichia coli O145:H28
GCA_008635365.1	BJRR00000000		SAMD00166665	150811	Escherichia coli O145:H28
GCA_008635345.1	BJRQ00000000		SAMD00166664	Ech14022	Escherichia coli O145:H28
GCA_008633885.1	BJPR00000000		SAMD00166613	09E126	Escherichia coli O145:H28
GCA_008633985.1	BJPS00000000		SAMD00166614	12E070	Escherichia coli O145:H28
GCA_008634665.1	BJQR00000000		SAMD00166639	EC3283	Escherichia coli O145:H28
GCA_008634855.1	BJQU00000000		SAMD00166642	IB14005	Escherichia coli O145:H28
GCA_008634825.1	BJQT00000000		SAMD00166641	140385	Escherichia coli O145:H28
GCA_008636025.1	BJSU00000000		SAMD00166694	162594	Escherichia coli O145:H28
GCA_008634735.1	BJQS00000000		SAMD00166640	133313	Escherichia coli O145:H28
GCA_008633845.1	BJPQ00000000		SAMD00166612	09E025	Escherichia coli O145:H28
GCA_008633825.1	BJPP00000000		SAMD00166611	EH1992	Escherichia coli O145:H28
GCA_008633805.1	BJPO00000000		SAMD00166610	EH2246	Escherichia coli O145:H28
GCA_008633785.1	BJPN00000000		SAMD00166609	EH2201	Escherichia coli O145:H28
GCA_008633765.1	BJPM00000000		SAMD00166608	EH2197	Escherichia coli O145:H28
GCA_008633745.1	BJPL00000000		SAMD00166607	EH2086	Escherichia coli O145:H28
GCA_008633725.1	BJPK00000000		SAMD00166606	EH2085	Escherichia coli O145:H28
GCA_008633705.1	BJPJ00000000		SAMD00166605	EH2011	Escherichia coli O145:H28
GCA_008633685.1	BJPI00000000		SAMD00166604	EH1995	Escherichia coli O145:H28
GCA_008633665.1	BJPH00000000		SAMD00166603	EH1910	Escherichia coli O145:H28
GCA_008633645.1	BJPG00000000		SAMD00166602	EH1904	Escherichia coli O145:H28
GCA_008633625.1	BJPF00000000		SAMD00166601	EH1846	Escherichia coli O145:H28
GCA_008633605.1	BJPE00000000		SAMD00166600	9793	Escherichia coli O145:H28
GCA_008633585.1	BJPD00000000		SAMD00166599	8100	Escherichia coli O145:H28
GCA_008633565.1	BJPC00000000		SAMD00166598	5044	Escherichia coli O145:H28
GCA_008633545.1	BJPB00000000		SAMD00166597	1649	Escherichia coli O145:H28
GCA_008633525.1	BJPA00000000		SAMD00166596	1380	Escherichia coli O145:H28
GCA_008633505.1	BJOZ00000000		SAMD00166595	12188	Escherichia coli O145:H28
GCA_009002655.1		3	SAMD00166592	10942	Escherichia coli O145:H28
GCA_009002845.1		2	SAMD00166593	112648	Escherichia coli O145:H28
GCA_009003065.1		3	SAMD00166594	122715	Escherichia coli O145:H28
GCA_026001525.1		3	SAMD00523005	JNE071324	Escherichia coli
GCA_026001605.1		5	SAMD00523010	PV01-97	Escherichia coli
GCA_026001685.1		2	SAMD00523011	JNE072929	Escherichia coli
GCA_026001345.1		3	SAMD00522970	JNE072951	Escherichia coli
GCA_026001405.1		4	SAMD00522975	JNE110611	Escherichia coli
GCA_026001465.1		5	SAMD00523003	PV06-71	Escherichia coli
GCA_026001745.1		2	SAMD00523013	JNE102603	Escherichia coli
GCA_008634095.2		3	SAMD00166616	12E115	Escherichia coli O145:H28
GCA_008635785.2		2	SAMD00166686	16003	Escherichia coli O145:H28
GCA_018403635.1	BOUU00000000		SAMD00291403	11E007	Escherichia coli
GCA_018403615.1	BOUT00000000		SAMD00291402	10E094	Escherichia coli
GCA_018403575.1	BOUR00000000		SAMD00291405	EC-PM098	Escherichia coli
GCA_018403595.1	BOUS00000000		SAMD00291401	07E033	Escherichia coli
GCA_018403555.1	BOUQ00000000		SAMD00291404	EC-PM083	Escherichia coli
GCA_019974515.1		2	SAMD00275791	E15042	Escherichia coli
GCA_019974495.1		3	SAMD00275772	CEC14159	Escherichia coli
GCA_019974475.1		2	SAMD00275768	SE14002	Escherichia coli
GCA_019974455.1		2	SAMD00275672	51104	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	158
Data volume, Tbytes	0.10

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Escherichia coli

Comparative genomic analysis of Shiga-toxin producing Escherichia coli

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