lake water metagenome (ID 504774) - BioProject

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Accession: PRJDB6644 ID: 504774

lake water metagenome

Shotgun metagenomics of bacterioplankton in Lake Biwa (2016)

Shotgun metagenome sequencing was performed to reveal eco-physiology of bacterioplankton in Lake Biwa, Japan. More...

Accession	PRJDB6644
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	lake water metagenome[Taxonomy ID: 1647806] unclassified sequences; metagenomes; ecological metagenomes; lake water metagenome
Publications	Okazaki Y et al., "Genome-resolved viral and cellular metagenomes revealed potential key virus-host interactions in a deep freshwater lake.", Environ Microbiol, 2019 Dec;21(12):4740-4754 Mehrshad M et al., "Hidden in plain sight-highly abundant and diverse planktonic freshwater Chloroflexi.", Microbiome, 2018 Oct 2;6(1):176
Submission	Registration date: 29-May-2019 Center for Ecological Research, Kyoto University
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	12431
WGS master	57
SRA Experiments	7
Protein Sequences	115880
Publications
PubMed	2
PMC	1
Other datasets
BioSample	64
Assembly	57

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

52
5
57

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_014189895.1	BJFQ00000000	SAMD00166046	LBMAG_Acidobacteria_hypo.bin1	Acidobacteriota bacterium
GCA_014190015.1	BJFT00000000	SAMD00166049	LBMAG_Actinobacteria_epi.bin3_acI-Phila	Actinomycetes bacterium
GCA_014189975.1	BJFS00000000	SAMD00166048	LBMAG_Actinobacteria_epi.bin2_acIV	Actinomycetes bacterium
GCA_014189935.1	BJFR00000000	SAMD00166047	LBMAG_Actinobacteria_epi.bin1_acI	Actinomycetes bacterium
GCA_014190295.1	BJGF00000000	SAMD00166061	LBMAG_Actinobacteria_hypo.bin9_acIV	Actinomycetes bacterium
GCA_014190275.1	BJGE00000000	SAMD00166060	LBMAG_Actinobacteria_hypo.bin8_acSTL	Actinomycetes bacterium
GCA_014190255.1	BJGD00000000	SAMD00166059	LBMAG_Actinobacteria_hypo.bin7	Actinomycetes bacterium
GCA_014190235.1	BJGC00000000	SAMD00166058	LBMAG_Actinobacteria_hypo.bin6_acIV	Actinomycetes bacterium
GCA_014190215.1	BJGB00000000	SAMD00166057	LBMAG_Actinobacteria_hypo.bin5_acIV	Actinomycetes bacterium
GCA_014190195.1	BJGA00000000	SAMD00166056	LBMAG_Actinobacteria_hypo.bin4_acI	Actinomycetes bacterium
GCA_014190175.1	BJFZ00000000	SAMD00166055	LBMAG_Actinobacteria_hypo.bin3_acI-C1	Actinomycetes bacterium
GCA_014190155.1	BJFY00000000	SAMD00166054	LBMAG_Actinobacteria_hypo.bin2_acI	Actinomycetes bacterium
GCA_014190115.1	BJFX00000000	SAMD00166053	LBMAG_Actinobacteria_hypo.bin1_acI-A7	Actinomycetes bacterium
GCA_014190095.1	BJFW00000000	SAMD00166052	LBMAG_Actinobacteria_epi.bin6_acIV	Actinomycetes bacterium
GCA_014190055.1	BJFV00000000	SAMD00166051	LBMAG_Actinobacteria_epi.bin5_acIV	Actinomycetes bacterium
GCA_014190035.1	BJFU00000000	SAMD00166050	LBMAG_Actinobacteria_epi.bin4_acTH1	Actinomycetes bacterium
GCA_014190355.1	BJGH00000000	SAMD00166063	LBMAG_Alphaproteobacteria_epi.bin2	Alphaproteobacteria bacterium
GCA_014191295.1	BJHA00000000	SAMD00166082	LBMAG_Chloroflexi_hypo.bin1_CL500-11	Anaerolineae bacterium
GCA_014190455.1	BJGK00000000	SAMD00166066	LBMAG_Armatimonadetes_hypo.bin1	Armatimonadota bacterium
GCA_014190535.1	BJGO00000000	SAMD00166070	LBMAG_Bacteroidetes_epi.bin4	Bacteroidota bacterium
GCA_014190515.1	BJGN00000000	SAMD00166069	LBMAG_Bacteroidetes_epi.bin3	Bacteroidota bacterium
GCA_014190495.1	BJGM00000000	SAMD00166068	LBMAG_Bacteroidetes_epi.bin2_bacI	Bacteroidota bacterium
GCA_014190475.1	BJGL00000000	SAMD00166067	LBMAG_Bacteroidetes_epi.bin1_bacI	Bacteroidota bacterium
GCA_014190575.1	BJGQ00000000	SAMD00166072	LBMAG_Bacteroidetes_hypo.bin2	Bacteroidota bacterium
GCA_014190555.1	BJGP00000000	SAMD00166071	LBMAG_Bacteroidetes_hypo.bin1	Bacteroidota bacterium
GCA_014190945.1	BJGW00000000	SAMD00166078	LBMAG_Ca.Levybacteria_hypo.bin1	Candidatus Levyibacteriota bacterium
GCA_014191035.1	BJGX00000000	SAMD00166079	LBMAG_Ca.Saccharibacteria_epi.bin1	Candidatus Saccharibacteria bacterium
GCA_014191195.1	BJGZ00000000	SAMD00166081	LBMAG_Chlorobi_hypo.bin1_OPB56	Chlorobiota bacterium
GCA_014191135.1	BJGY00000000	SAMD00166080	LBMAG_Chlorobi_epi.bin1_OPB56	Chlorobiota bacterium
GCA_014191415.1	BJHB00000000	SAMD00166083	LBMAG_Chloroflexi_hypo.bin2_TK10	Chloroflexota bacterium
GCA_014190675.1	BJGT00000000	SAMD00166075	LBMAG_Betaproteobacteria_hypo.bin2_Limnohabitans	Comamonadaceae bacterium
GCA_014191665.1	BJHD00000000	SAMD00166085	LBMAG_Cyanobacteria_epi.bin2	Cyanobium sp.
GCA_014191535.1	BJHC00000000	SAMD00166084	LBMAG_Cyanobacteria_epi.bin1	Cyanobium sp.
GCA_014191755.1	BJHE00000000	SAMD00166086	LBMAG_Cyanobacteria_epi.bin3	Cyanobium sp.
GCA_014191855.1	BJHF00000000	SAMD00166087	LBMAG_Deltaproteobacteria_hypo.bin1	Deltaproteobacteria bacterium
GCA_014192065.1	BJHH00000000	SAMD00166089	LBMAG_Gemmatimonadetes_hypo.bin1	Gemmatimonadota bacterium
GCA_014191975.1	BJHG00000000	SAMD00166088	LBMAG_Gammaproteobacteria_hypo.bin1_Methylobacter	Methylococcaceae bacterium
GCA_014190435.1	BJGJ00000000	SAMD00166065	LBMAG_Alphaproteobacteria_hypo.bin2_Methylocystis	Methylocystaceae bacterium
GCA_014190615.1	BJGS00000000	SAMD00166074	LBMAG_Betaproteobacteria_hypo.bin1_LD28	Methylophilaceae bacterium
GCA_014190595.1	BJGR00000000	SAMD00166073	LBMAG_Betaproteobacteria_epi.bin1_LD28	Methylophilaceae bacterium
GCA_014190895.1	BJGV00000000	SAMD00166077	LBMAG_Betaproteobacteria_hypo.bin3_Nitrosospira	Nitrosomonadaceae bacterium
GCA_014190785.1	BJGU00000000	SAMD00166076	LBMAG_Betaproteobacteria_hypo.bin2_Nitrosospira	Nitrosomonadaceae bacterium
GCA_014193235.1	BJHR00000000	SAMD00166099	LBMAG_Thaumarchaeota_hypo.bin1_Ca.Nitrosoarchaeum	Nitrosopumilaceae archaeon
GCA_014192195.1	BJHI00000000	SAMD00166090	LBMAG_Nitrospira_hypo.bin1	Nitrospirota bacterium
GCA_014190415.1	BJGI00000000	SAMD00166064	LBMAG_Alphaproteobacteria_hypo.bin1_LD12	Pelagibacterales bacterium
GCA_014190315.1	BJGG00000000	SAMD00166062	LBMAG_Alphaproteobacteria_epi.bin1_LD12	Pelagibacterales bacterium
GCA_014192545.1	BJHL00000000	SAMD00166093	LBMAG_Planctomycetes_epi.bin3	Phycisphaerae bacterium
GCA_014192905.1	BJHO00000000	SAMD00166096	LBMAG_Planctomycetes_hypo.bin3	Phycisphaerae bacterium
GCA_014192775.1	BJHN00000000	SAMD00166095	LBMAG_Planctomycetes_hypo.bin2	Phycisphaerae bacterium
GCA_014192315.1	BJHJ00000000	SAMD00166091	LBMAG_Planctomycetes_epi.bin1	Planctomycetia bacterium
GCA_014192425.1	BJHK00000000	SAMD00166092	LBMAG_Planctomycetes_epi.bin2	Planctomycetia bacterium
GCA_014193005.1	BJHP00000000	SAMD00166097	LBMAG_Planctomycetes_hypo.bin4	Planctomycetia bacterium
GCA_014193115.1	BJHQ00000000	SAMD00166098	LBMAG_Planctomycetes_hypo.bin5	Planctomycetota bacterium
GCA_014192625.1	BJHM00000000	SAMD00166094	LBMAG_Planctomycetes_hypo.bin1_CL500-15	Planctomycetota bacterium
GCA_014189875.1	BJFP00000000	SAMD00166102	LBMAG_Verrucomicrobia_hypo.bin3	Verrucomicrobiota bacterium
GCA_014193395.1	BJHT00000000	SAMD00166101	LBMAG_Verrucomicrobia_hypo.bin2	Verrucomicrobiota bacterium
GCA_014193315.1	BJHS00000000	SAMD00166100	LBMAG_Verrucomicrobia_hypo.bin1_CL120-10	Verrucomicrobiota bacterium

SRA Data Details

Parameter	Value
Data volume, Gbases	24
Data volume, Mbytes	15157

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lake water metagenome

Shotgun metagenomics of bacterioplankton in Lake Biwa (2016)

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