Salmonella enterica (ID 422065) - BioProject

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Accession: PRJDB6430 ID: 422065

Salmonella enterica

Whole genome sequencing of Salmonella enterica serovar Typhimurium and its monophasic variant isolated from food animals in Japan

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Salmonella enterica serovar Typhimurium (Salmonella Typhimurium) and the monophasic variant (Salmonella 4,[5],12:i:-) are the major cause of gastroenteritis for both humans and animals. More...

Accession	PRJDB6430
Data Type	Genome sequencing
Scope	Monoisolate
Organism	Salmonella enterica[Taxonomy ID: 28901] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Salmonella; Salmonella enterica
Publications	Published online: Arai N et al., "Phylogenetic Characterization ofSalmonella entericaSerovar Typhimurium and Its Monophasic Variant Isolated from Food Animals in Japan Revealed Replacement of Major Epidemic Clones in the Last 4 Decades", Journal of Clinical Microbiology, 2018;56(5)
Submission	Registration date: 11-Dec-2017 Laboratory of Bacterial Genomics, Pathogen Genomics Center, National Institute of Infectious Diseases

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	34
SRA Experiments	462
Protein Sequences	89580
Other datasets
BioSample	319
Assembly	17

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

17
17

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_019670465.1	1	SAMD00234746	L-4741	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670445.1	2	SAMD00234738	L-4681	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670425.1	2	SAMD00234684	L-4614	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670405.1	2	SAMD00234679	L-4605	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670385.1	2	SAMD00234670	L-4596	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670365.1	2	SAMD00234655	L-4578	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670345.1	3	SAMD00234645	L-4567	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670325.1	2	SAMD00234630	L-4551	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670305.1	1	SAMD00234616	L-4526	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670285.1	3	SAMD00234603	L-4445	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670265.1	1	SAMD00234580	L-4334	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670245.1	5	SAMD00097501	L-4261	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670225.1	2	SAMD00097500	L-4233	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670205.1	1	SAMD00097514	L-4126	Salmonella enterica subsp. enterica serovar Typhimurium
GCA_019670185.1	1	SAMD00097511	L-3844	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670165.1	1	SAMD00097506	L-3837	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-
GCA_019670145.1	1	SAMD00097512	L-3835	Salmonella enterica subsp. enterica serovar 4,[5],12:i:-

SRA Data Details

Parameter	Value
Data volume, Gbases	230
Data volume, Mbytes	95973

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Salmonella enterica

Whole genome sequencing of Salmonella enterica serovar Typhimurium and its monophasic variant isolated from food animals in Japan

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