ID 1046055 - BioProject

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Accession: PRJNA1046055 ID: 1046055

The global diversification of the lucinid chemosymbiosis

Comparative genomic analyses of chemosymbiotic bacteria associated with lucinids from diverse habitats across the globe.

Accession	PRJNA1046055
Data Type	Genome sequencing
Scope	Multispecies
Publications	Sudo M et al., "SoxY gene family expansion underpins adaptation to diverse hosts and environments in symbiotic sulfide oxidizers.", mSystems, 2024 Jun 18;9(6):e0113523
Submission	Registration date: 28-Nov-2023 University of Vienna
Relevance	Environmental

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	71
SRA Experiments	68
Publications
PubMed	1
PMC	1
Other datasets
BioSample	139
Assembly	71

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

71
71

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_040506495.1	JBEVWS000000000	SAMN38471284	1PA	Candidatus Sedimenticola sp. 1PA
GCA_040506525.1	JBEVWR000000000	SAMN38471283	20ELBAFRAG	Candidatus Sedimenticola sp. 20ELBAFRAG
GCA_040506475.1	JBEVWT000000000	SAMN38471285	4PFRAG1	Candidatus Sedimenticola sp. 4PFRAG1
GCA_040506445.1	JBEVWU000000000	SAMN38471286	6PFRAG1	Candidatus Sedimenticola sp. 6PFRAG1
GCA_040506395.1	JBEVWV000000000	SAMN38471287	6PFRAG5	Candidatus Sedimenticola sp. 6PFRAG5
GCA_040506415.1	JBEVWW000000000	SAMN38471288	6PFRAG7	Candidatus Sedimenticola sp. 6PFRAG7
GCA_040506425.1	JBEVWX000000000	SAMN38471289	PURPLELP	Candidatus Sedimenticola sp. PURPLELP
GCA_040506375.1	JBEVWY000000000	SAMN38471290	L143	Candidatus Thiodiazotropha endolucinida
GCA_040506355.1	JBEVXB000000000	SAMN38471293	L165	Candidatus Thiodiazotropha endolucinida
GCA_040506335.1	JBEVXA000000000	SAMN38471292	L167	Candidatus Thiodiazotropha endolucinida
GCA_040506315.1	JBEVWZ000000000	SAMN38471291	L144	Candidatus Thiodiazotropha endolucinida
GCA_040507095.1	JBEVVO000000000	SAMN38471254	L111	Candidatus Thiodiazotropha endolucinida
GCA_040507165.1	JBEVVL000000000	SAMN38471251	L097	Candidatus Thiodiazotropha endolucinida
GCA_040506785.1	JBEVWE000000000	SAMN38471270	4PLUC2	Candidatus Thiodiazotropha lotti
GCA_040506695.1	JBEVWF000000000	SAMN38471271	4PLUCS	Candidatus Thiodiazotropha lotti
GCA_040506535.1	JBEVWO000000000	SAMN38471280	6PLUC8	Candidatus Thiodiazotropha lotti
GCA_040506515.1	JBEVWQ000000000	SAMN38471282	THAU1	Candidatus Thiodiazotropha lotti
GCA_040506055.1	JBEVXN000000000	SAMN38471305	CTENA5	Candidatus Thiodiazotropha sp.
GCA_040506015.1	JBEVXO000000000	SAMN38471306	CTENA5 12EA1	Candidatus Thiodiazotropha sp.
GCA_040506025.1	JBEVXQ000000000	SAMN38471308	CTENA5 CR6	Candidatus Thiodiazotropha sp.
GCA_040505995.1	JBEVXR000000000	SAMN38471309	CTENA5 HO10	Candidatus Thiodiazotropha sp.
GCA_040505935.1	JBEVXS000000000	SAMN38471310	CTENA5 TH1	Candidatus Thiodiazotropha sp.
GCA_040506195.1	JBEVXH000000000	SAMN38471299	CTENA5 L149	Candidatus Thiodiazotropha sp.
GCA_040506155.1	JBEVXI000000000	SAMN38471300	CTENA1 L147	Candidatus Thiodiazotropha sp.
GCA_040506115.1	JBEVXJ000000000	SAMN38471301	CTENA4 L148	Candidatus Thiodiazotropha sp.
GCA_040506075.1	JBEVXP000000000	SAMN38471307	CTENA5 8BS1	Candidatus Thiodiazotropha sp.
GCA_040507115.1	JBEVVN000000000	SAMN38471253	CTENA1 L110	Candidatus Thiodiazotropha sp.
GCA_040506775.1	JBEVWC000000000	SAMN38471268	INDO1 L198	Candidatus Thiodiazotropha sp.
GCA_040506815.1	JBEVWD000000000	SAMN38471269	CTENA5 L158	Candidatus Thiodiazotropha sp.
GCA_040506825.1	JBEVWB000000000	SAMN38471267	INDO1 L196	Candidatus Thiodiazotropha sp.
GCA_040507065.1	JBEVVP000000000	SAMN38471255	CTENA3 L117	Candidatus Thiodiazotropha sp.
GCA_040507055.1	JBEVVQ000000000	SAMN38471256	CTENA4 L114	Candidatus Thiodiazotropha sp.
GCA_040507035.1	JBEVVR000000000	SAMN38471257	CTENA7 L123	Candidatus Thiodiazotropha sp.
GCA_040507005.1	JBEVVS000000000	SAMN38471258	CTENA6 L123	Candidatus Thiodiazotropha sp.
GCA_040506975.1	JBEVVT000000000	SAMN38471259	CTENA5 DIVAS	Candidatus Thiodiazotropha sp.
GCA_040507295.1	JBEVVF000000000	SAMN38471245	CTENA4 3PP	Candidatus Thiodiazotropha sp.
GCA_040507225.1	JBEVVG000000000	SAMN38471246	AUST1 L219	Candidatus Thiodiazotropha sp.
GCA_040507245.1	JBEVVH000000000	SAMN38471247	AUST2 L127	Candidatus Thiodiazotropha sp.
GCA_040506235.1	JBEVXE000000000	SAMN38471296	4PDIV1	Candidatus Thiodiazotropha sp. 4PDIV1
GCA_040506255.1	JBEVXF000000000	SAMN38471297	4PDIVS1	Candidatus Thiodiazotropha sp. 4PDIVS1
GCA_040506215.1	JBEVXG000000000	SAMN38471298	6PDIVS	Candidatus Thiodiazotropha sp. 6PDIVS
GCA_040506705.1	JBEVWG000000000	SAMN38471272	6PLUC1	Candidatus Thiodiazotropha sp. 6PLUC1
GCA_040506725.1	JBEVWH000000000	SAMN38471273	6PLUC10	Candidatus Thiodiazotropha sp. 6PLUC10
GCA_040506715.1	JBEVWI000000000	SAMN38471274	6PLUC2	Candidatus Thiodiazotropha sp. 6PLUC2
GCA_040506675.1	JBEVWJ000000000	SAMN38471275	6PLUC3	Candidatus Thiodiazotropha sp. 6PLUC3
GCA_040506625.1	JBEVWK000000000	SAMN38471276	6PLUC4	Candidatus Thiodiazotropha sp. 6PLUC4
GCA_040506635.1	JBEVWL000000000	SAMN38471277	6PLUC5	Candidatus Thiodiazotropha sp. 6PLUC5
GCA_040506615.1	JBEVWM000000000	SAMN38471278	6PLUC6	Candidatus Thiodiazotropha sp. 6PLUC6
GCA_040506595.1	JBEVWN000000000	SAMN38471279	6PLUC7	Candidatus Thiodiazotropha sp. 6PLUC7
GCA_040506575.1	JBEVWP000000000	SAMN38471281	6PLUC9	Candidatus Thiodiazotropha sp. 6PLUC9
GCA_040506275.1	JBEVXD000000000	SAMN38471295	DIVDIV	Candidatus Thiodiazotropha sp. DIVDIV
GCA_040506095.1	JBEVXM000000000	SAMN38471304	L084R	Candidatus Thiodiazotropha sp. L084R
GCA_040506295.1	JBEVXC000000000	SAMN38471294	LLP2	Candidatus Thiodiazotropha sp. LLP2
GCA_040506135.1	JBEVXK000000000	SAMN38471302	L054	Sedimenticola sp.
GCA_040506175.1	JBEVXL000000000	SAMN38471303	L031	Sedimenticola sp.
GCA_040505915.1	JBEVXV000000000	SAMN38471313	2 TCF1	Sedimenticola sp.
GCA_040505895.1	JBEVXU000000000	SAMN38471312	1_2 TCF2	Sedimenticola sp.
GCA_040505975.1	JBEVXW000000000	SAMN38471314	2 TCF2	Sedimenticola sp.
GCA_040505955.1	JBEVXT000000000	SAMN38471311	1_1 TCF1	Sedimenticola sp.
GCA_040507235.1	JBEVVE000000000	SAMN38471244	L015	Sedimenticola sp.
GCA_040507215.1	JBEVVJ000000000	SAMN38471249	L070	Sedimenticola sp.
GCA_040507195.1	JBEVVI000000000	SAMN38471248	L071	Sedimenticola sp.
GCA_040507155.1	JBEVVK000000000	SAMN38471250	L076	Sedimenticola sp.
GCA_040506945.1	JBEVVV000000000	SAMN38471261	divoraustram26	Sedimenticola sp.
GCA_040506885.1	JBEVVX000000000	SAMN38471263	L067	Sedimenticola sp.
GCA_040506905.1	JBEVVW000000000	SAMN38471262	L066	Sedimenticola sp.
GCA_040506895.1	JBEVVY000000000	SAMN38471264	3502E	Sedimenticola sp.
GCA_040506995.1	JBEVVU000000000	SAMN38471260	divoraustram25	Sedimenticola sp.
GCA_040506805.1	JBEVWA000000000	SAMN38471266	OVUMBEN	Sedimenticola sp.
GCA_040506875.1	JBEVVZ000000000	SAMN38471265	L059	Sedimenticola sp.
GCA_040507105.1	JBEVVM000000000	SAMN38471252	L069	Sedimenticola sp.

SRA Data Details

Parameter	Value
Data volume, Gbases	288
Data volume, Tbytes	0.11

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The global diversification of the lucinid chemosymbiosis

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