After quality filtering and assembly of the 36 isolates using Unicycler (v0.4.8),
sequences were taxonomically classified in Kraken2 using an in-house database.
Based on Kraken2 classification, 27 of the 36 isolates were linked to eight bacterial
genera and nine isolates to two fungal genera. The bacterial isolates were identified as
Pseudomonas, Pantoea, Sphingomonas, Methylobacterium, Curtobacterium,
Streptomyces, Bacillus and Chryseobacterium. Similarly, the fungal isolates were
identified as Fusarium and Cryptococcus. Less...