Bacteria associated with the Human Microbiota (ID 549513) - BioProject

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Accession: PRJNA549513 ID: 549513

Bacteria associated with the Human Microbiota

Bacterial species cultivated from multiple sites across the human microbiota (oral, nasal, skin, gastrointestinal tract, reproductive tract).

Complete closed genome and associated methylome efforts for bacteria grown in isolation from multiple sites across the human microbiota (oral, nasal, skin, gastrointestinal tract, reproductive tract).

Accession	PRJNA549513
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Zepeda-Rivera M et al., "A distinct Fusobacterium nucleatum clade dominates the colorectal cancer niche.", Nature, 2024 Apr;628(8007):424-432 Johnston CD et al., "Systematic evasion of the restriction-modification barrier in bacteria.", Proc Natl Acad Sci U S A, 2019 Jun 4;116(23):11454-11459
Grants	"The SyngenicDNA and ?POET Platform: Overcoming Innate Barriers to Genetic Engineering in Bacteria." (Grant ID R01 DE027850, National Institute of Dental and Craniofacial Research)
Submission	Registration date: 18-Jun-2019 Forsyth Institute - Fred Hutchinson Cancer Research Institute
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (total)	194
WGS master	7
Genomic DNA	187
SRA Experiments	2
Protein Sequences	317392
Publications
PubMed	2
PMC	2
Other datasets
BioSample	292
Assembly	141
Supplementary data
Base modification	21

Assembly details:

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Assembly level

Number of Assemblies

128
6
7
141

Assembly	WGS	Chrs	BioSample	Strain	Taxonomy
GCA_020911725.1		3	SAMN19659030	IFB3C5	Clostridium cadaveris
GCA_011612265.2		1	SAMN14365915	ATCC 14266	Corynebacterium matruchotii
GCA_037912275.1		1	SAMN22215927	KCOM1279	Fusobacterium animalis
GCA_037912025.1		1	SAMN21582306	KCOM1325	Fusobacterium animalis
GCA_037911955.1		1	SAMN21582314	KCOM2765	Fusobacterium animalis
GCA_037911945.1		1	SAMN21582315	KCOM2860	Fusobacterium animalis
GCA_037911935.1		1	SAMN21582316	KCOM2877	Fusobacterium animalis
GCA_037911925.1		2	SAMN21582320	KCOM2952	Fusobacterium animalis
GCA_037911915.1		1	SAMN21582321	KCOM2969	Fusobacterium animalis
GCA_037911905.1		1	SAMN21582323	KCOM3127	Fusobacterium animalis
GCA_037911975.1		1	SAMN21582312	KCOM2538	Fusobacterium animalis
GCA_037911885.1		1	SAMN21582326	KCOM3229	Fusobacterium animalis
GCA_037911875.1		1	SAMN21582330	KCOM3645	Fusobacterium animalis
GCA_037911855.1		1	SAMN21582163	SB052	Fusobacterium animalis
GCA_037911845.1		1	SAMN21582164	SB053	Fusobacterium animalis
GCA_037911815.1		1	SAMN21582167	SB056	Fusobacterium animalis
GCA_037911025.1		1	SAMN21582168	SB058	Fusobacterium animalis
GCA_037909675.1		1	SAMN21582170	SB060	Fusobacterium animalis
GCA_037908355.1		1	SAMN21582171	SB061	Fusobacterium animalis
GCA_037907055.1		1	SAMN21582172	SB062	Fusobacterium animalis
GCA_037906465.1		1	SAMN21582169	SB059	Fusobacterium animalis
GCA_037906395.1		1	SAMN21582178	SB063	Fusobacterium animalis
GCA_037906355.1		1	SAMN21582177	SB008	Fusobacterium animalis
GCA_037905245.1		2	SAMN19767267	KCOM1280	Fusobacterium animalis
GCA_037904725.1		1	SAMN19767271	KCOM2763	Fusobacterium animalis
GCA_037904595.1		1	SAMN19767284	KCOM3367	Fusobacterium animalis
GCA_037897545.1		3	SAMN19765471	SB024	Fusobacterium animalis
GCA_037897535.1		1	SAMN19765472	SB025	Fusobacterium animalis
GCA_037897515.1		1	SAMN19765473	SB026	Fusobacterium animalis
GCA_037897505.1		1	SAMN19765474	SB027	Fusobacterium animalis
GCA_037897485.1		3	SAMN19765476	SB029	Fusobacterium animalis
GCA_037897425.1		1	SAMN19765478	SB031	Fusobacterium animalis
GCA_037897415.1		1	SAMN19765481	SB034	Fusobacterium animalis
GCA_037904575.1		1	SAMN19767292	KCOM3774	Fusobacterium animalis
GCA_037893335.1		1	SAMN15202579	SB020	Fusobacterium animalis
GCA_037888955.1		1	SAMN15202577	SB018	Fusobacterium animalis
GCA_037889045.1		1	SAMN15202564	SB001	Fusobacterium animalis
GCA_037889035.1		1	SAMN15202566	SB003	Fusobacterium animalis
GCA_037889015.1		2	SAMN15202570	SB010	Fusobacterium animalis
GCA_037888995.1		4	SAMN15202572	SB012	Fusobacterium animalis
GCA_037888975.1		1	SAMN15202574	SB014	Fusobacterium animalis
GCA_037889075.1		1	SAMN19765491	SB044	Fusobacterium canifelinum
GCA_037889295.1		1	SAMN21582175	SB057	Fusobacterium necrophorum
GCA_037955985.1		1	SAMN27745277	SB022	Fusobacterium necrophorum
GCA_037577975.1	JAMKBX000000000		SAMN27745361	SB023	Fusobacterium necrophorum
GCA_037578025.1	JAJAVJ000000000		SAMN22215920	SB067	Fusobacterium nucleatum
GCA_037578015.1	JAJAVK000000000		SAMN22215921	SB017	Fusobacterium nucleatum
GCA_037577715.1	JAJAVO000000000		SAMN22215926	KCOM3157	Fusobacterium nucleatum
GCA_037577915.1	JAJAVN000000000		SAMN22215925	KCOM1260	Fusobacterium nucleatum
GCA_037577875.1	JAJAVM000000000		SAMN22215924	KCOM1254	Fusobacterium nucleatum
GCA_037954885.1		1	SAMN21582331	KCOM3674	Fusobacterium nucleatum
GCA_037955165.1		1	SAMN21582329	KCOM3363	Fusobacterium nucleatum
GCA_037955445.1		1	SAMN21582327	KCOM3240	Fusobacterium nucleatum
GCA_037953125.1		1	SAMN21582318	KCOM2883	Fusobacterium nucleatum
GCA_037954595.1		1	SAMN21582338	KCOM2205	Fusobacterium nucleatum
GCA_037953935.1		1	SAMN19767268	KCOM2013	Fusobacterium nucleatum
GCA_037952305.1		1	SAMN21582319	KCOM2939	Fusobacterium nucleatum
GCA_037951365.1		1	SAMN21582322	KCOM2995	Fusobacterium nucleatum
GCA_037993075.1		1	SAMN21582346	KCOM1981	Fusobacterium nucleatum
GCA_037975335.1		1	SAMN21582324	KCOM3187	Fusobacterium nucleatum
GCA_037889285.1		1	SAMN19767266	KCOM1276	Fusobacterium nucleatum
GCA_037889275.1		2	SAMN19767269	KCOM2373	Fusobacterium nucleatum
GCA_037889265.1		1	SAMN19767272	KCOM2847	Fusobacterium nucleatum
GCA_037889255.1		1	SAMN19767273	KCOM2878	Fusobacterium nucleatum
GCA_037889245.1		1	SAMN19767274	KCOM2898	Fusobacterium nucleatum
GCA_037889235.1		1	SAMN19767275	KCOM2902	Fusobacterium nucleatum
GCA_037889225.1		1	SAMN19767276	KCOM2907	Fusobacterium nucleatum
GCA_037889215.1		1	SAMN19767279	KCOM3154	Fusobacterium nucleatum
GCA_037889205.1		1	SAMN19767280	KCOM3164	Fusobacterium nucleatum
GCA_037889195.1		1	SAMN19767281	KCOM3205	Fusobacterium nucleatum
GCA_037889185.1		1	SAMN19767282	KCOM3208	Fusobacterium nucleatum
GCA_037889175.1		1	SAMN19767283	KCOM3321	Fusobacterium nucleatum
GCA_037889165.1		1	SAMN19767286	KCOM3457	Fusobacterium nucleatum
GCA_037889155.1		1	SAMN19767287	KCOM3503	Fusobacterium nucleatum
GCA_037889145.1		1	SAMN19767288	KCOM3685	Fusobacterium nucleatum
GCA_037889135.1		1	SAMN19767289	KCOM3714	Fusobacterium nucleatum
GCA_037889125.1		1	SAMN19767290	KCOM3756	Fusobacterium nucleatum
GCA_037889115.1		1	SAMN19767291	KCOM3764	Fusobacterium nucleatum
GCA_037889105.1		1	SAMN19765477	SB030	Fusobacterium nucleatum
GCA_037889095.1		1	SAMN19765479	SB032	Fusobacterium nucleatum
GCA_037889065.1		1	SAMN19765495	SB048	Fusobacterium nucleatum
GCA_037889055.1		1	SAMN19765496	SB049	Fusobacterium nucleatum
GCA_037889345.1		1	SAMN21582340	KCOM3182	Fusobacterium nucleatum
GCA_037889335.1		2	SAMN21582341	KCOM3412	Fusobacterium nucleatum
GCA_037889325.1		1	SAMN21582344	KCOM1801	Fusobacterium nucleatum
GCA_037889315.1		1	SAMN21582347	KCOM3486	Fusobacterium nucleatum
GCA_037890135.1		1	SAMN21582308	KCOM2312	Fusobacterium nucleatum
GCA_037889385.1		1	SAMN21582332	KCOM3713	Fusobacterium nucleatum
GCA_037889375.1		1	SAMN21582333	KCOM3739	Fusobacterium nucleatum
GCA_037889365.1		1	SAMN21582334	KCOM3758	Fusobacterium nucleatum
GCA_037889005.1		1	SAMN15202571	SB011	Fusobacterium nucleatum subsp. nucleatum
GCA_037900345.1		1	SAMN21582564	ATCC 25586	Fusobacterium nucleatum subsp. nucleatum ATCC 25586
GCA_037899945.1		1	SAMN21582337	KCOM1231	Fusobacterium nucleatum
GCA_037899555.1		2	SAMN19767263	KCOM1250	Fusobacterium nucleatum
GCA_037899175.1		3	SAMN19767293	KCOM1001	Fusobacterium nucleatum
GCA_037898875.1		1	SAMN19767294	KCOM1002	Fusobacterium nucleatum
GCA_037898445.1		1	SAMN19767295	KCOM1232	Fusobacterium nucleatum
GCA_037896705.1		2	SAMN19765482	SB035	Fusobacterium nucleatum
GCA_037897495.1		1	SAMN19765475	SB028	Fusobacterium polymorphum
GCA_037900625.1		3	SAMN21582562	ATCC 10953	Fusobacterium polymorphum ATCC 10953
GCA_037893865.1		1	SAMN19765487	SB040	Fusobacterium polymorphum
GCA_037893695.1		1	SAMN15202569	SB009	Fusobacterium polymorphum
GCA_037898185.1		1	SAMN19767297	KCOM1271	Fusobacterium polymorphum
GCA_037897925.1		3	SAMN19767298	KCOM1272	Fusobacterium polymorphum
GCA_037897635.1		1	SAMN19767299	KCOM1275	Fusobacterium polymorphum
GCA_037897565.1		1	SAMN19767300	KCOM1278	Fusobacterium polymorphum
GCA_037897555.1		2	SAMN19767301	KCOM1281	Fusobacterium polymorphum
GCA_037904495.1		1	SAMN19767296	KCOM1257	Fusobacterium polymorphum
GCA_037904605.1		3	SAMN19767278	KCOM3036	Fusobacterium polymorphum
GCA_037904935.1		1	SAMN19767270	KCOM2500	Fusobacterium polymorphum
GCA_037906325.1		2	SAMN19767264	KCOM1267	Fusobacterium polymorphum
GCA_037905975.1		1	SAMN19767265	KCOM1274	Fusobacterium polymorphum
GCA_037906365.1		1	SAMN21582176	SB004	Fusobacterium polymorphum
GCA_037911965.1		1	SAMN21582313	KCOM2594	Fusobacterium polymorphum
GCA_037911895.1		1	SAMN21582325	KCOM3210	Fusobacterium polymorphum
GCA_037912015.1		4	SAMN21582307	KCOM1330	Fusobacterium polymorphum
GCA_037912005.1		1	SAMN21582309	KCOM2446	Fusobacterium polymorphum
GCA_037911995.1		1	SAMN21582310	KCOM2510	Fusobacterium polymorphum
GCA_037911985.1		2	SAMN21582311	KCOM2517	Fusobacterium polymorphum
GCA_037889025.1		1	SAMN15202567	SB005	Fusobacterium polymorphum
GCA_037888965.1		1	SAMN15202576	SB016	Fusobacterium polymorphum
GCA_037888985.1		3	SAMN15202573	SB013	Fusobacterium polymorphum
GCA_037889355.1		1	SAMN21582336	KCOM1322	Fusobacterium pseudoperiodonticum
GCA_037889085.1		1	SAMN19765486	SB039	Fusobacterium pseudoperiodonticum
GCA_037956035.1		1	SAMN27745276	SB070	Fusobacterium ulcerans
GCA_037578495.1	JAJAVL000000000		SAMN22215922	SB068	Fusobacterium ulcerans
GCA_037953465.1		1	SAMN22215923	SB069	Fusobacterium varium
GCA_037889305.1		1	SAMN21582173	SB064	Fusobacterium varium
GCA_037901015.1		1	SAMN21582174	SB065	Fusobacterium varium
GCA_037904225.1		1	SAMN15202578	SB019	Fusobacterium vincentii
GCA_037895375.1		1	SAMN19765484	SB037	Fusobacterium vincentii
GCA_037893545.1		1	SAMN15202575	SB015	Fusobacterium vincentii
GCA_037911865.1		1	SAMN21582339	KCOM2931	Fusobacterium vincentii
GCA_037911835.1		1	SAMN21582165	SB054	Fusobacterium vincentii
GCA_037911825.1		3	SAMN21582166	SB055	Fusobacterium vincentii
GCA_037904585.1		1	SAMN19767285	KCOM3370	Fusobacterium vincentii
GCA_037904615.1		1	SAMN19767277	KCOM2988	Fusobacterium vincentii
GCA_011612705.1		1	SAMN14365914	ATCC 23331	Kingella kingae
GCA_011612385.1		1	SAMN14365913	ATCC 23332	Kingella kingae
GCA_020911745.1		2	SAMN19659029	CTX51T	Morganella morganii
GCA_011612585.1		1	SAMN14365916	ATCC 51100	Streptococcus cristatus ATCC 51100

SRA Data Details

Parameter	Value
Data volume, Gbases	1
Data volume, Mbytes	344

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Bacteria associated with the Human Microbiota

Bacterial species cultivated from multiple sites across the human microbiota (oral, nasal, skin, gastrointestinal tract, reproductive tract).

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