Microbiome Culture Collection (ID 548918) - BioProject

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Accession: PRJNA548918 ID: 548918

Microbiome Culture Collection

A microbial artificial consortium to restore the gut microbiota of elderly people. Genome sequencing and assembly

One hundred bacterial strains were isolated from healthy members of the elderly community and screened for potentially dangerous properties such as virulence and antibiotic resistance. More...

Accession	PRJNA548918
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Perez M et al., "A synthetic consortium of 100 gut commensals modulates the composition and function in a colon model of the microbiome of elderly subjects.", Gut Microbes, 2021 Jan-Dec;13(1):1-19
Submission	Registration date: 14-Jun-2019 University College Cork
Relevance	gut health

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	100
SRA Experiments	135
Publications
PubMed	1
PMC	1
Other datasets
BioSample	235
Assembly	100

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Total

100
100

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_018784685.1	WQOQ00000000	SAMN12147402	MCC552	Agathobacter rectalis
GCA_018784725.1	WQOP00000000	SAMN12147403	MCC553	Agathobacter rectalis
GCA_018786185.1	WQRD00000000	SAMN12147335	MCC001	Alistipes putredinis
GCA_018784745.1	WQOS00000000	SAMN12147400	MCC544	Anaerobutyricum hallii
GCA_018786165.1	WQRC00000000	SAMN12147336	MCC003	Anaerostipes hadrus
GCA_018786145.1	WQRB00000000	SAMN12147337	MCC006	Anaerostipes hadrus
GCA_018786105.1	WQRA00000000	SAMN12147338	MCC007	Anaerostipes hadrus
GCA_018786055.1	WQQZ00000000	SAMN12147339	MCC022	Bacteroides caccae
GCA_018786085.1	WQQX00000000	SAMN12147341	MCC084	Bacteroides eggerthii
GCA_018786045.1	WQQW00000000	SAMN12147342	MCC085	Bacteroides faecis
GCA_018786025.1	WQQV00000000	SAMN12147343	MCC108	Bacteroides fragilis
GCA_018785975.1	WQQT00000000	SAMN12147345	MCC137	Bacteroides ovatus
GCA_018785965.1	WTXO00000000	SAMN12147346	MCC138	Bacteroides ovatus
GCA_018785945.1	WQQS00000000	SAMN12147347	MCC153	Bacteroides salyersiae
GCA_018785925.1	WQQR00000000	SAMN12147348	MCC154	Bacteroides salyersiae
GCA_018785895.1	WQQQ00000000	SAMN12147349	MCC174	Bacteroides thetaiotaomicron
GCA_018785885.1	WQQP00000000	SAMN12147350	MCC175	Bacteroides thetaiotaomicron
GCA_018785865.1	WTXN00000000	SAMN12147351	MCC197	Bacteroides uniformis
GCA_018785825.1	WQQO00000000	SAMN12147352	MCC198	Bacteroides uniformis
GCA_018785775.1	WQQL00000000	SAMN12147355	MCC246	Bacteroides xylanisolvens
GCA_018785745.1	WQQK00000000	SAMN12147356	MCC247	Bacteroides xylanisolvens
GCA_018785765.1	WQQJ00000000	SAMN12147357	MCC256	Barnesiella intestinihominis
GCA_018785705.1	WQQH00000000	SAMN12147359	MCC258	Bifidobacterium adolescentis
GCA_018785715.1	WQQI00000000	SAMN12147358	MCC257	Bifidobacterium adolescentis
GCA_018785685.1	WQQF00000000	SAMN12147361	MCC265	Bifidobacterium longum
GCA_018785645.1	WQQG00000000	SAMN12147360	MCC264	Bifidobacterium longum
GCA_018785625.1	WQQC00000000	SAMN12147364	MCC281	Blautia faecis
GCA_018785655.1	WQQE00000000	SAMN12147362	MCC269	Blautia sp. MCC269
GCA_018785605.1	WQQD00000000	SAMN12147363	MCC270	Blautia sp. MCC270
GCA_018785565.1	WQQB00000000	SAMN12147365	MCC283	Blautia sp. MCC283
GCA_018785585.1	WQQA00000000	SAMN12147366	MCC289	Blautia sp. MCC289
GCA_018785545.1	WQPZ00000000	SAMN12147367	MCC298	Blautia wexlerae
GCA_018785515.1	WQPY00000000	SAMN12147368	MCC316	Butyricicoccus faecihominis
GCA_018785505.1	WQPX00000000	SAMN12147369	MCC318	Catenibacterium mitsuokai
GCA_018785475.1	WQPV00000000	SAMN12147371	MCC332	Clostridium baratii
GCA_018785465.1	WQPW00000000	SAMN12147370	MCC328	Clostridium sp. MCC328
GCA_018785425.1	WQPT00000000	SAMN12147373	MCC334	Clostridium sp. MCC334
GCA_018785365.1	WQPQ00000000	SAMN12147376	MCC344	Clostridium sp. MCC344
GCA_018785345.1	WQPP00000000	SAMN12147377	MCC345	Clostridium sp. MCC345
GCA_018785315.1	WQPN00000000	SAMN12147379	MCC353	Clostridium sp. MCC353
GCA_018785265.1	WQPK00000000	SAMN12147382	MCC370	Collinsella aerofaciens
GCA_018785245.1	WQPL00000000	SAMN12147381	MCC356	Collinsella aerofaciens
GCA_018785195.1	WQPJ00000000	SAMN12147383	MCC394	Coprococcus catus
GCA_018785175.1	WQPI00000000	SAMN12147384	MCC395	Coprococcus catus
GCA_018785165.1	WQPG00000000	SAMN12147386	MCC412	Coprococcus comes
GCA_018785285.1	WQPO00000000	SAMN12147378	MCC346	Coprococcus comes
GCA_018785205.1	WQPH00000000	SAMN12147385	MCC409	Coprococcus comes
GCA_018785055.1	WQPE00000000	SAMN12147388	MCC422	Coprococcus eutactus
GCA_018785145.1	WQPF00000000	SAMN12147387	MCC414	Coprococcus eutactus
GCA_018784045.1	WQNV00000000	SAMN12147423	MCC690	Cutibacterium acnes
GCA_018785025.1	WQPD00000000	SAMN12147389	MCC432	Desulfovibrio desulfuricans
GCA_018784945.1	WQPB00000000	SAMN12147391	MCC444	Dorea formicigenerans
GCA_018785105.1	WQPC00000000	SAMN12147390	MCC443	Dorea formicigenerans
GCA_018784875.1	WQOZ00000000	SAMN12147393	MCC452	Dorea longicatena
GCA_018784865.1	WQPA00000000	SAMN12147392	MCC451	Dorea longicatena
GCA_018784815.1	WQOU00000000	SAMN12147398	MCC505	Enterobacteriaceae bacterium MCC505
GCA_018785445.1	WQPU00000000	SAMN12147372	MCC333	Enterocloster bolteae
GCA_018785395.1	WQPS00000000	SAMN12147374	MCC335	Enterocloster citroniae
GCA_018784885.1	WQOY00000000	SAMN12147394	MCC472	Enterococcus durans
GCA_018784985.1	WQOX00000000	SAMN12147395	MCC499	Enterococcus faecalis
GCA_018784845.1	WQOW00000000	SAMN12147396	MCC503	Enterococcus faecium
GCA_018784805.1	WQOV00000000	SAMN12147397	MCC504	Escherichia coli
GCA_018784785.1	WQOT00000000	SAMN12147399	MCC506	Escherichia coli
GCA_018784765.1	WQOR00000000	SAMN12147401	MCC545	Eubacterium ramulus
GCA_018784655.1	WQON00000000	SAMN12147405	MCC576	Eubacterium ventriosum
GCA_018784695.1	WQOO00000000	SAMN12147404	MCC575	Eubacterium ventriosum
GCA_018784645.1	WQOM00000000	SAMN12147406	MCC585	Faecalibacterium prausnitzii
GCA_018784565.1	WQOK00000000	SAMN12147408	MCC589	Faecalibacterium prausnitzii
GCA_018784555.1	WQOL00000000	SAMN12147407	MCC588	Faecalibacterium prausnitzii
GCA_018784465.1	WQOI00000000	SAMN12147410	MCC626	Fusicatenibacter saccharivorans
GCA_018784445.1	WQOH00000000	SAMN12147411	MCC627	Gemmiger formicilis
GCA_018785385.1	WQPR00000000	SAMN12147375	MCC342	Hungatella hathewayi
GCA_018784325.1	WQOE00000000	SAMN12147414	MCC636	Lactiplantibacillus plantarum
GCA_018784425.1	WQOG00000000	SAMN12147412	MCC633	Levilactobacillus brevis
GCA_018784395.1	WQOD00000000	SAMN12147415	MCC646	Ligilactobacillus ruminis
GCA_018783965.1	WQNO00000000	SAMN12147430	MCC719	Mediterraneibacter faecis
GCA_018784305.1	WQOC00000000	SAMN12147416	MCC662	Methanobrevibacter smithii
GCA_018784285.1	WQOB00000000	SAMN12147417	MCC664	Odoribacter splanchnicus
GCA_018784225.1	WQOA00000000	SAMN12147418	MCC667	Oscillibacter sp. MCC667
GCA_018784195.1	WQNZ00000000	SAMN12147419	MCC668	Parabacteroides distasonis
GCA_018784125.1	WQNY00000000	SAMN12147420	MCC679	Parabacteroides distasonis
GCA_018784105.1	WQNX00000000	SAMN12147421	MCC685	Parabacteroides merdae
GCA_018786115.1	WQQY00000000	SAMN12147340	MCC060	Phocaeicola dorei
GCA_018785995.1	WQQU00000000	SAMN12147344	MCC136	Phocaeicola massiliensis
GCA_018785805.1	WQQM00000000	SAMN12147354	MCC221	Phocaeicola vulgatus
GCA_018785835.1	WQQN00000000	SAMN12147353	MCC208	Phocaeicola vulgatus
GCA_018784545.1	WQOJ00000000	SAMN12147409	MCC625	Pseudoflavonifractor sp. MCC625
GCA_018784025.1	WQNU00000000	SAMN12147424	MCC694	Roseburia hominis
GCA_018783985.1	WQNT00000000	SAMN12147425	MCC695	Roseburia hominis
GCA_018784035.1	WQNS00000000	SAMN12147426	MCC698	Roseburia inulinivorans
GCA_018784005.1	WQNR00000000	SAMN12147427	MCC699	Ruminococcus bicirculans (ex Wegman et al. 2014)
GCA_018783565.1	WQNQ00000000	SAMN12147428	MCC714	Ruminococcus bromii
GCA_018783905.1	WQNP00000000	SAMN12147429	MCC718	Ruminococcus sp. MCC718
GCA_018784385.1	WQOF00000000	SAMN12147413	MCC634	Secundilactobacillus kimchicus
GCA_018784085.1	WQNW00000000	SAMN12147422	MCC688	Segatella copri
GCA_018783915.1	WQNN00000000	SAMN12147431	MCC742	Streptococcus salivarius
GCA_018783545.1	WQNM00000000	SAMN12147432	MCC747	Streptococcus salivarius
GCA_018783885.1	WQNL00000000	SAMN12147433	MCC752	Sutterella wadsworthensis
GCA_018783925.1	WQNK00000000	SAMN12147434	MCC755	Veillonella parvula
GCA_018785305.1	WQPM00000000	SAMN12147380	MCC354	[Clostridium] symbiosum

SRA Data Details

Parameter	Value
Data volume, Gbases	4
Data volume, Mbytes	2381

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Microbiome Culture Collection

A microbial artificial consortium to restore the gut microbiota of elderly people. Genome sequencing and assembly

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