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Accession: PRJNA215032 ID: 215032

mixed culture KAZ_0815

Next Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia

Purpose: Identification of transcriptionally active genes in the unculturable community constituent, Smithella, during hexadecane degradation; Differential gene expression analysis of hexadecane-relevant genes acoss three different conditions; Extension of metatranscriptomic datasets to other community constituents to identify interspecies relationships. More...
AccessionPRJNA215032; GEO: GSE49830
Data TypeTranscriptome or Gene expression
ScopeMultiisolate
Organismmixed culture KAZ_0815[Taxonomy ID: 1385599]
unclassified sequences; mixed culture KAZ_0815
Publications
  • Embree M et al., "Networks of energetic and metabolic interactions define dynamics in microbial communities.", Proc Natl Acad Sci U S A, 2015 Dec 15;112(50):15450-5
  • Embree M et al., "Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.", ISME J, 2014 Apr;8(4):757-67
SubmissionRegistration date: 13-Aug-2013
Bioengineering, University of California, San Diego
RelevanceUnknown
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3
Publications
PubMed2
PMC2
Other datasets
BioSample3
GEO DataSets1
GEO Data Details
ParameterValue
Data volume, Supplementary Mbytes1
SRA Data Details
ParameterValue
Data volume, Gbases10
Data volume, Mbytes6525

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