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Accession: PRJNA215032 ID: 215032

mixed culture KAZ_0815

Next Generation Metatranscriptome Sequencing of an Anaerobic Hexadecane-Degrading Microbial Consortia

Purpose: Identification of transcriptionally active genes in the unculturable community constituent, Smithella, during hexadecane degradation; Differential gene expression analysis of hexadecane-relevant genes acoss three different conditions; Extension of metatranscriptomic datasets to other community constituents to identify interspecies relationships. More...
AccessionPRJNA215032; GEO: GSE49830
Data TypeTranscriptome or Gene expression
Organismmixed culture KAZ_0815[Taxonomy ID: 1385599]
unclassified sequences; mixed culture KAZ_0815
  • Embree M et al., "Networks of energetic and metabolic interactions define dynamics in microbial communities.", Proc Natl Acad Sci U S A, 2015 Dec 15;112(50):15450-5
  • Embree M et al., "Single-cell genome and metatranscriptome sequencing reveal metabolic interactions of an alkane-degrading methanogenic community.", ISME J, 2014 Apr;8(4):757-67
SubmissionRegistration date: 13-Aug-2013
Bioengineering, University of California, San Diego
Project Data:
Resource NameNumber
of Links
Sequence data
SRA Experiments3
Other datasets
GEO DataSets1
GEO Data Details
Data volume, Supplementary Mbytes1
SRA Data Details
Data volume, Gbases10
Data volume, Mbytes6525

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