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Select item 11554351.

Understanding the molecular basis of phenotypic variations in chickens is essential to elucidate how different breeds of these animals exhibit distinct characteristics, and it has important implications for avian genetic breeding programs. This study aimed to identify differences in gene expression and biological processes (BPs) between Brazilian broiler chicken (TT) and laying hen (CC) breeds, during early development (from 2.5 to 3.5 days), establishing the global transcriptional profile of the embryonic tissues that generate the wing and breast regions of the chicken. The TT and CC strains were selected at the National Center for Swine and Poultry Research of Embrapa.

: Project data type: Other

Scope:: Monoisolate

University of Sao Paulo

Accession:: PRJEB65907
ID:: 1155435

Select item 11443742.

Loss of CD4 T cell responses to prior vaccines associate with inflammation and altered transcriptional signatures in HIV infection

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Virology institute, Universitätsklinikum Erlangen

Accession:: PRJNA1144374
ID:: 1144374

Select item 11373653.

H3.3K122A results in a neomorphic phenotype in mouse embryonic stem cells (TT-Seq)

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Hainer Lab, Department of Biological Sciecnes, University of Pittsburgh

Accession:: PRJNA1137365
ID:: 1137365

Select item 11259094.

D. melanogaster tilt sequence

: Project data type: Raw sequence reads

Scope:: Multispecies

Duke University

Accession:: PRJNA1125909
ID:: 1125909

Select item 11216335.

Thalassia testudinum strain:var. Tt-101

Thalassia testudinum strain:var. Tt-101 Raw sequence reads

Taxonomy:: Thalassia testudinum

: Project data type: Raw sequence reads

Scope:: Monoisolate

HudsonAlpha Genome Sequencing Center

Accession:: PRJNA1121633
ID:: 1121633

Select item 11203416.

Notch induces transcription by stimulating release of paused RNA Pol II without increasing chromatin accessibility [TT-seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Other

Scope:: Multiisolate

Blacklow Lab, BCMP, Harvard Medical School

Accession:: PRJNA1120341
ID:: 1120341

Select item 11088717.

Ubiquitylation of Pol II controls early stages of the transcription cycle [TT-seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Other

Scope:: Multiisolate

MRC-LMB

Accession:: PRJNA1108871
ID:: 1108871

Select item 11082748.

KAP1 negatively regulates elongation kinetics to activate signal-induced transcription [TT-Seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

NL3.110A, Microbiology, UT Southwestern Medical Center

Accession:: PRJNA1108274
ID:: 1108274

Select item 11063849.

Gene expression of ERAP2 proficient and deficient patient-derived organoids post IFNg-stimulation

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Norwegian University of Science and Technology

Accession:: PRJNA1106384
ID:: 1106384

Select item 109161910.

Paired analysis of host and pathogen genomes identifies determinants of human tuberculosis

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Harvard University School of Public Health

Accession:: PRJNA1091619
ID:: 1091619

Select item 109092311.

An obesogenic FTO allele causes accelerated development, growth and insulin resistance in human skeletal muscle cells

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Institute of Zoology, Chinese Academy of Sciences

Accession:: PRJNA1090923
ID:: 1090923

Select item 108522312.

ASH1L guards cis-regulatory elements against cyclobutane pyrimidine dimer induction [ChIP-seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Naegeli Lab, Vetsuisse Faculty, Institute of Veterinary Pharmacology and Toxicology, University of Zurich

Accession:: PRJNA1085223
ID:: 1085223

Select item 107436413.

Thalassia testudinum genome sequencing and assembly

Taxonomy:: Thalassia testudinum

: Umbrella project

DOE Joint Genome Institute

Accession:: PRJNA1074364
ID:: 1074364

Select item 107247214.

Transcription, RNA processing and RNA stability in T. brucei

: Project data type: Other

Scope:: Monoisolate

Department of Veterinary Sciences, Ludwig-Maximilians-Universitat Munchen

Accession:: PRJEB71063
ID:: 1072472

Select item 106807215.

Thalassia testudinum cultivar:Tt-101

Thalassia testudinum alternate haplotype genome sequencing and assembly

Taxonomy:: Thalassia testudinum

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA1068072
ID:: 1068072

Select item 106807116.

Thalassia testudinum cultivar:Tt-101

Thalassia testudinum main haplotype genome sequencing and assembly

Taxonomy:: Thalassia testudinum

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA1068071
ID:: 1068071

Select item 106709917.

Autophagy-enhancing ATG16L1 polymorphism improves clinical outcomes and promotes superior T-cell immunity in chronic HIV-1 infection

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Autophagy-directed Immunity, Experimental Immunology, Amsterdam UMC

Accession:: PRJNA1067099
ID:: 1067099

Select item 106526518.

TT-seq in mESCs with and without TIP60

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

INSTITUTE OF GENETICS AND MOLECULAR AND CELLULAR BIOLOGY

Accession:: PRJNA1065265
ID:: 1065265

Select item 105023919.

Farnesyltransferase inhibition overcomes the adaptive resistance to targeted therapies in oncogene-addicted non-small cell lung cancer II

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

CRCT

Accession:: PRJNA1050239
ID:: 1050239

Select item 104896020.

Transcriptional shut-off of MAP kinase signaling enables pluripotency maintenance during diapause [PRO-seq]

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Other

Scope:: Multiisolate

Adelman, Biological Chemistry and Molecular Pharmacology, Harvard Medical School

Accession:: PRJNA1048960
ID:: 1048960

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