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Organizing biological data

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Select item 11781341.

16S rRNA gene amplicon sequencing

: Project data type: Raw sequence reads

Scope:: Multispecies

Nanjing Agriculture University

Accession:: PRJNA1178134
ID:: 1178134

Select item 10793332.

Zosterops RADseq data

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Kansas

Accession:: PRJNA1079333
ID:: 1079333

Select item 10374423.

ONCOLINER tumorized precision dataset

Tumorized precision dataset for ONCOLINER: A new solution for monitoring, improving, and harmonizing somatic variant calling across genomic oncology centers

: Project data type: Other

Scope:: Monoisolate

Barcelona Supercomputing Center - Centro Nacional de Supercomputacion

Accession:: PRJEB68324
ID:: 1037442

Select item 8839604.

Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants (pcHiC)

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Other

Scope:: Multiisolate

The Bult Lab, The Jackson Laboratory

Accession:: PRJNA883960
ID:: 883960

Select item 8640325.

Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Epigenomics

Scope:: Multiisolate

The Bult Lab, The Jackson Laboratory

Accession:: PRJNA864032
ID:: 864032

Select item 8502516.

Exome capture sequencing of wild barley (Hordeum spontaneum) from Israel

: Project data type: Other

Scope:: Monoisolate

The James Hutton Institute, Scotland, United Kingdom

Accession:: PRJEB53543
ID:: 850251

Select item 8500777.

Intratumoral mregDC and Tfh-like niches enable local reinvigoration of CD8 T cells following PD-1 blockade

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Other

Scope:: Multiisolate

ImmunoBio, Human Immune Monitoring Center

Accession:: PRJNA850077
ID:: 850077

Select item 8159718.

scATAC-seq over multiple time points of heart development in WT C57Bl6/J embryos and in Tbx1 mutant mice (Tbx1 KO)

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Epigenomics

Scope:: Multiisolate

Gladstone Institutes

Accession:: PRJNA815971
ID:: 815971

Select item 8126129.

HIV-1 J-Lat 10.6 Nanopore MinION R9.4.1 and R10.3 sequencing

: Project data type: Raw sequence reads

Scope:: Multispecies

Drexel University

Accession:: PRJNA812612
ID:: 812612

Select item 74193910.

Transcriptome data from tomato parthenocarpic mutants lacking Tomato APETALA3 (TAP3)

Organism:: Solanum lycopersicum

Taxonomy:: Solanum lycopersicum (tomato)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Center for Sustainable Resource Science, RIKEN

Accession:: PRJNA741939
ID:: 741939

Select item 74193811.

Transcriptome data from tomato parthenocarpic mutants lacking Aux/IAA transcription factor SlIAA9

Organism:: Solanum lycopersicum

Taxonomy:: Solanum lycopersicum (tomato)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Center for Sustainable Resource Science, RIKEN

Accession:: PRJNA741938
ID:: 741938

Select item 74116912.

Antimicrobial resistance in brown bears

The oral microbiota of wild bears in Sweden reflects the history of antibiotic use by humans

: Project data type: Other

Scope:: Monoisolate

Norwegian University of Science and Technology

Accession:: PRJEB42014
ID:: 741169

Select item 66747613.

Mycobacteria excises DNA damage in 12- or 13-nucleotide-long oligomers by prokaryotic-type dual incisions and performs transcription-coupled repair

Taxonomy:: Mycolicibacterium smegmatis

: Project data type: Other

Scope:: Multiisolate

Aziz Sancar, Biochemistry & Biophysics, University of North Carolina at Chapel Hill

Accession:: PRJNA667476
ID:: 667476

Select item 65925814.

food fermentation metagenome

Metagenome-Assembled Genomes from cocoa beans fermentation

Taxonomy:: food fermentation metagenome

: Project data type: Genome sequencing

Scope:: Environment

FCFRP

Accession:: PRJNA659258
ID:: 659258

Select item 62303115.

Utility of targeted sequence capture for phylogenomics in rapid, recent angiosperm radiations: Neotropical Burmeistera bellflowers as a case study

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Missouri-St. Louis

Accession:: PRJNA623031
ID:: 623031

Select item 61564416.

Genotyping-by-sequencing and ecological niche modeling illuminate phylogeography, admixture, and Pleistocene range dynamics in quaking aspen (Populus tremuloides)

: Project data type: Raw sequence reads

Scope:: Multispecies

Virginia Commonwealth University

Accession:: PRJNA615644
ID:: 615644

Select item 61520117.

Human Variation in Gingival Inflammation (HVGI) Study

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Washington

Accession:: PRJNA615201
ID:: 615201

Select item 41744318.

Chlorocebus sabaeus

Effect annotated whole genome variants for 163 vervet monkeys (SNPs, Indels, and macaque fixed differences)

Taxonomy:: Chlorocebus sabaeus (green monkey)

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB22989
ID:: 417443

Select item 41243219.

Ogye body map RRBS data

Organism:: Gallus gallus

Taxonomy:: Gallus gallus (chicken)

: Project data type: Epigenomics

Scope:: Multiisolate

Department of Life Science, Hanyang University

Accession:: PRJNA412432
ID:: 412432

Select item 41240420.

Ogye body map RNA-seq data

Organism:: Gallus gallus

Taxonomy:: Gallus gallus (chicken)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Department of Life Science, Hanyang University

Accession:: PRJNA412404
ID:: 412404

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