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Organizing biological data
Effects of application of (Z)-3-Hexenol on Solanum lycopersicum
Patiria miniata
Differential gene expression RNAseq of FGFR perturbed 3 day old Patiria miniata larvae
HIV-1 J-Lat 10.6 Nanopore MinION R9.4.1 and R10.3 sequencing
Transcriptome analisys of scl28-3
Effect of in utero nicotine exposure and elastase instillation on transcriptomic profile at post-elastase day 3 in mice
Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 3 days post infection
1000 Genomes Project phase 3: 30X coverage whole genome sequencing of 698 samples to complete trios
30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set
Exome capture sequencing of 403 barley accessions for the analysis of copy number variants
We exome captured and sequenced 397 diverse barley accessions to carry out a genome-wide analysis copy number variants affecting coding sequences. The Roche Nimblegen exome capture array was used to enrich for exon sequences (http://sequencing.roche.com/products/nimblegen-seqcap-target-enrichment/seqcap-ez-system/seqcap-ez-designs.html). The enriched samples were then sequenced using an Illumina HiSeq 2000 sequencer. An average of 2 x 24.6 million paired end Illumina reads per sample were generated, which correspond to approximately 80x coverage of the 61.3 Mbp exome capture space.
Single-cell RNA-seq of mouse embryoid body cells, day 3 to day 7. Includes wild type and Tet TKO.
Single-cell methylation and accessibility of mouse embryoid body cells, day 3 to day 7. Includes wild type and Tet TKO.
Freshwater monitoring by nanopore sequencing (Albacore v2.3.1 base calls)
1000 Genomes Project phase 3: 30X coverage whole genome sequencing
30X whole genome sequencing coverage of the 2504 Phase 3 1000 Genome samples.
Mus musculus
Single-cell RNA-seq of 1.3 million brain cells from E18 mice
Homo sapiens
NCIC CTG MA.22 phase I/II trial of epirubicin and docetaxel in locally advanced breast cancer on 2-weekly or 3-weekly schedules
Transcriptional patterns associated with OvCar-3 cells in response to osteopontin-c splicing isoform overexpression
Transcriptional patterns associated with PC-3 cells in response to osteopontin-c splicing isoform overexpression
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