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  • The following terms were not found in BioProject: ethylhexanoate, 2-ethylhexanoate.
1.

Transcription factor PATZ1 promotes adipogenesis by controlling promoter regulatory loci of adipogenic factors [ChIPseq_D-2_D0_D5_D8]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Icahn School of Medicine at Mount Sinai
Accession:
PRJNA1141421
ID:
1141421
2.

Effect of Regnase-2/MCPIP2/ZC3H12B overexpression in human glioblastoma U-251 MG cell line.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Aneta Kasza, Cell Biochemistry, Jagiellonian University
Accession:
PRJNA1045288
ID:
1045288
3.

Durable and efficient gene silencing in vivo by hit-and-run epigenome editing [RNAseq_2]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
TIGET, SR-TIGET
Accession:
PRJNA1005918
ID:
1005918
4.

Durable and efficient gene silencing in vivo by hit-and-run epigenome editing [targetBSseq_DMRs_2]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
TIGET, SR-TIGET
Accession:
PRJNA1005912
ID:
1005912
5.

Durable and efficient gene silencing in vivo by hit-and-run epigenome editing [targetBSseq_CpG_Pcsk9_2]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
TIGET, SR-TIGET
Accession:
PRJNA1005910
ID:
1005910
6.

Missense mutations in linker-2 of KLF1 impair expression of membrane transporters and cytoskeletal proteins to cause hemolysis

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
ACBD
Accession:
PRJNA1004227
ID:
1004227
7.

Transcriptional regulation by the NSL complex enables diversification of IFT functions in ciliated versus non-ciliated cells [ChIP-Seq 2]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Akhtar Lab, Chromatin Regulation, Max Planck Institute of Immunobiology and Epigenetics
Accession:
PRJNA985605
ID:
985605
8.

The transcriptional co-repressor Runx1t1 is essential for N-Myc-driven neuroblastoma tumorigenesis [RNA-Seq 2]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Children's Cancer Institute
Accession:
PRJNA958161
ID:
958161
9.

Rice paddy soil microbiome 16S rRNA: Household biomass ash as a fertilizer to sustainability

16S-soil-ash-Bangladesh, Here we investigated in large scale field trials across two geographic regions and two seasons, if domestic hearth ash can be used as a fertilizer for paddy rice cultivation, how geographic, season and application of household ash to soil impact on rice yield, and grain quality (accumulation of As, Cd, alongside nutrient elements) and rhizosphere soil microbial composition. The study was conducted in 9 homesteads each for two geographic regions (Madhupur & Barind tract), over two seasons (wet &dry). In each season, the following 3 treatments were applied: 1=control (conventional NKPS), 2= Ash (ash to supply all required P plus urea and K), 3 =control plus ash (1 t ash per ha plus conventional NPKS). At the end of each season, grain yield, mineral elements in grain (ICP-MS) and rhizosphere soil microbial community (16S rRNA amplicon sequencing, Illumina) were assessed and at the end of the overall experiment the overall impact on mineral elements in soil (XRF) evaluated.

Project data type: Other
Scope:
Monoisolate
QUEEN'S UNIVERSITY BELFAST
Accession:
PRJEB45341
ID:
929772
10.

Genome-wide gene expression profiling of macrophages treated with novel 1,2,4-oxadiazole scaffold-based compounds

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Institut Pasteur
Accession:
PRJNA922037
ID:
922037
11.

A genome-wide screen reveals new regulators of the 2-cell-like cell state

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Epigenetics and Cell Fate Unit
Accession:
PRJNA915411
ID:
915411
12.

Comprehensive screens and a universal zinc finger model enable transcription factor reprogramming 2 factor reprogrammingComprehensive screens and a universal zinc finger model enable transcription factor reprogramming

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Department of Biochemistry and Molecular Pharmacology, NYU School of Medicine
Accession:
PRJNA889775
ID:
889775
13.

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation [RNA-Seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Center for Applied Bioinformatics, St Jude Children's Research Hosipital
Accession:
PRJNA844363
ID:
844363
14.

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation [SLAM-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Center for Applied Bioinformatics, St Jude Children's Research Hosipital
Accession:
PRJNA844055
ID:
844055
15.

Auxin-inducible degron 2 system deciphers functions of CTCF domains in transcriptional regulation [HiChIP]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Center for Applied Bioinformatics, St Jude Children's Research Hosipital
Accession:
PRJNA833451
ID:
833451
16.

CRISPR screens for host factors critical for infection by SARS-CoV-2 variants of concern

Project data type: Other
Scope:
Multispecies
Noam Stern-Ginossar, Molecular Genetics, Weizmann Institute
Accession:
PRJNA812945
ID:
812945
17.

Genes reliant upon Ser26 in Egr-1

RNA-seq Identifies Basal and Inducible Genes Reliant Upon Ser26 in the Zinc Finger Transcription Factor Early Growth Response-1 Responding to Fibroblast Growth Factor-2

Project data type: Other
Scope:
Monoisolate
UNIVERSITY OF NEW SOUTH WALES
Accession:
PRJEB48159
ID:
788258
18.

Carbonic Anhydrase 2 is Required for Maintaining Metabolic Homeostasis of Human Articular Chondrocytes

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brian DeBosch, Pediatrics and Cell Biology & Physiology, Washington University School of Medicine
Accession:
PRJNA762934
ID:
762934
19.

Characterization of the immune response in patients with cancer of the oral cavity after neoadjuvant immunotherapy with the IRX-2 regimen

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Sartor, Bioinformatics, University of Michigan
Accession:
PRJNA727300
ID:
727300

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