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Organizing biological data
Gordonia sp. Z-3
Gordonia sp. Z-3 Genome sequencing and assembly
3' RACE-seq of endogenous LINE-1 mRNA's 3' non-templated ends in PA-1 control kd, XRN1 kd, DCP2 kd, and DIS3L2 kd (kd by RNAi for 48h = set 1, or 126h = set 2), and 293T wild-type and XRN1 KO.
3' RACE-seq of reporter and endogenous LINE-1 mRNA's 3' non-templated ends in 293T and PA-1 cells under permanent (genomic knock-out) or temporal (RNAi) depletions of XRN1, DCP2, (DIS3L2) and control conditions
Effects of application of (Z)-3-Hexenol on Solanum lycopersicum
3' RACE-seq of reporter LINE-1 and control mRNAs' 3' non-templated ends in 293T 'wild-type', XRN1 KO, DCP2 KO, DCP2 plus XRN1 KO cells
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis [RNA-seq III]
Bulk RNA-seq of zebrafish 5dpf embryos comparing Klf9 knockout with matched controls at 3 timepoints flanking zeitgeber (lights on)
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [ATAC-seq (h3.3ko)]
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [Bisulfite-seq]
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [ChIP-Seq]
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [RNA-Seq]
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [Strand-specific RNA-seq]
Arabidopsis histone variant H3.3 establishes a proper chromatin regulatory landscape essential for post-embryonic development [ATAC-seq (h2a.z)]
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis [RNA-seq I]
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis [RNA-seq II]
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis [HTR5-GFP ChIP-seq]
Coordinated histone variant H2A.Z eviction and H3.3 deposition control plant thermomorphogenesis
ARID1A-dependent maintenance of H3.3 is required for repressive CHD4-ZMYND8 chromatin interactions at super-enhancers [12Z_shARID1A_H2A.Z_panH4ac_ChIP]
BRD2 CUT & RUN in Calu-3 cells
Porcine parvovirus 1 strain:CH/HN-3/2021 | isolate:Lung tissue | breed:swine
Porcine parvovirus 1 strain:CH/HN-3/2021 | isolate:Aborted fetus | breed:Porcine | Genome sequencing and assembly
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