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  • The following term was not found in BioProject: X77..
Accession: PRJNA419491 ID: 419491

Prunus avium (sweet cherry)

Prunus avium genome assembly and genome-wide analysis of domestication

See Genome Information for Prunus avium
With the aim to study the effects of the domestication at a genome-wide scale in cherry, we set out to reconstruct the genome sequence of a modern cherry variety ( BigStar*) and to analyze the genetic variation in samples exposed to different rates of selective pressure, such as wild cherry trees, landraces and the more recent modern varieties.
AccessionPRJNA419491
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismPrunus avium[Taxonomy ID: 42229]
Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus; Prunus avium
PublicationsPinosio S et al., "A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication.", Plant J, 2020 Aug;103(4):1420-1432
Grants
  • "Conoscenze Integrate per sostenibilità e innovazione del MADE IN ITALY Agroalimentare (CISIA)" (Grant ID B51J10001290001, Ministero dell'economia e finanza)
  • "Novel variation in plant breeding and the plant pan-genomes" (Grant ID 294780, European Research Council)
SubmissionRegistration date: 15-Jul-2020
Universita' degli Studi di Udine
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)3754
WGS master1
SRA Experiments106
Publications
PubMed1
Other datasets
BioSample103
Assembly1
SRA Data Details
ParameterValue
Data volume, Gbases462
Data volume, Tbytes0.24

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