This project consists of a series of experiments using Oxford Nanopore adaptive sampling with carrier DNA on anonymized clinical samples positive for SARS-CoV-2 during the Omicron wave including SARS-CoV-2 recombinants. We compared different levels of sample multiplexing per flow cell and viral loads (Ct values).
| Accession | PRJNA930601 |
| Data Type | Genome sequencing |
| Scope | Multispecies |
| Publications | - Published online: Terrazos Miani M et al., "NASCarD (Nanopore Adaptive Sampling with Carrier DNA): A rapid, PCR-free method for whole genome sequencing of pathogens in clinical samples", medRxiv, 2023;
|
| Grants | - "Multidisciplinary Center for Infectious Diseases," (Grant ID MCID, University of Bern, Bern, Switzerland)
- "BRIDGE Discovery" (Grant ID 40B2-0_203615, Swiss National Science Foundation, Bern, Switzerland)
|
| Submission | Registration date: 2-Feb-2023
University of Bern |
| Relevance | Medical |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 24 |
| Other datasets |
| BioSample | 24 |