Chicken Cecal Microbiome (ID 812961) - BioProject

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Accession: PRJNA812961 ID: 812961

Chicken Cecal Microbiome

Metagenomic survey the chicken cecal microbiome

Accession	PRJNA812961
Data Type	Genome sequencing and assembly
Scope	Environment
Organism	gut metagenome[Taxonomy ID: 749906] unclassified sequences; metagenomes; organismal metagenomes; gut metagenome
Publications	Ramírez GA et al., "Cecal Microbial Hydrogen Cycling Potential Is Linked to Feed Efficiency Phenotypes in Chickens.", Front Vet Sci, 2022;9:904698
Grants	"ANAEROBIC CHAMBER FOR CULTIVATION OF POULTRY PROBIOTIC STRAINS TO IMPROVE GUT HEALTH AND HOMEOSTASIS" (Grant ID 1011327, United State Dept of Agriculture) "BUILDING STRAIN LIBRARIES AS ALTERNATIVES TO ANTIBIOTIC GROWTH PROMOTERS IN BROILER CHICKENS" (Grant ID 1015210, United State Dept of Agriculture)
Submission	Registration date: 5-Aug-2022 Western University of Health Sciences
Relevance	Agricultural

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	30
SRA Experiments	34
Publications
PubMed	1
PMC	1
Other datasets
BioSample	36
Assembly	30

Assembly details:

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Assembly level

Number of Assemblies

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Total

30
30

Assembly	WGS	BioSample	Isolate	Taxonomy
GCA_024552855.1	JANJHT000000000	SAMN28058426	1973_C	gut metagenome
GCA_024552835.1	JANJHS000000000	SAMN28058425	1277_C	gut metagenome
GCA_024552775.1	JANJHU000000000	SAMN28058429	920_C	gut metagenome
GCA_024552755.1	JANJHV000000000	SAMN28058430	6844_C	gut metagenome
GCA_024553255.1	JANJHJ000000000	SAMN28058414	6860_C	gut metagenome
GCA_024553235.1	JANJHI000000000	SAMN28058413	906_C	gut metagenome
GCA_024553295.1	JANJHH000000000	SAMN28058412	6848_C	gut metagenome
GCA_024552695.1	JANJHW000000000	SAMN28058431	932_C	gut metagenome
GCA_024552875.1	JANJHR000000000	SAMN28058424	1215_C	gut metagenome
GCA_024552955.1	JANJHQ000000000	SAMN28058422	1909_C	gut metagenome
GCA_024552995.1	JANJHO000000000	SAMN28058420	6698_C	gut metagenome
GCA_024552975.1	JANJHP000000000	SAMN28058421	1975_C	gut metagenome
GCA_024552655.1	JANJHX000000000	SAMN28058432	966_C	gut metagenome
GCA_024552475.1	JANJIB000000000	SAMN28058436	6852_C	gut metagenome
GCA_024552555.1	JANJIA000000000	SAMN28058435	6842_C	gut metagenome
GCA_024552615.1	JANJHY000000000	SAMN28058433	6892_C	gut metagenome
GCA_024552575.1	JANJHZ000000000	SAMN28058434	6840_C	gut metagenome
GCA_024553155.1	JANJHL000000000	SAMN28058416	6666_C	gut metagenome
GCA_024553095.1	JANJHM000000000	SAMN28058417	1213_C	gut metagenome
GCA_024553055.1	JANJHN000000000	SAMN28058419	6700_C	gut metagenome
GCA_024553175.1	JANJHK000000000	SAMN28058415	6664_C	gut metagenome
GCA_024553355.1	JANJHG000000000	SAMN28058411	904_C	gut metagenome
GCA_024552415.1	JANJIC000000000	SAMN28058437	946_C	gut metagenome
GCA_024552395.1	JANJID000000000	SAMN28058438	1941_C	gut metagenome
GCA_024552375.1	JANJIE000000000	SAMN28058439	982_C	gut metagenome
GCA_024552355.1	JANJIF000000000	SAMN28058440	968_C	gut metagenome
GCA_024552335.1	JANJIJ000000000	SAMN28058444	1929_C	gut metagenome
GCA_024552315.1	JANJII000000000	SAMN28058443	1931_C	gut metagenome
GCA_024552295.1	JANJIG000000000	SAMN28058441	936_C	gut metagenome
GCA_024552275.1	JANJIH000000000	SAMN28058442	914_C	gut metagenome

SRA Data Details

Parameter	Value
Data volume, Mbases	116
Data volume, Mbytes	67

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