Escherichia coli (ID 729115) - BioProject

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Accession: PRJNA729115 ID: 729115

Escherichia coli

Using whole-genome sequencing to characterise Escherichia coli associated with bacteraemia from Wales, United Kingdom

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9215 additional projects are related by organism.

This study used whole-genome sequencing to characterise a nationwide collection of clinical Escherichia coli isolates from extraintestinal infections in Wales (United Kingdom) between 2013 and 2014.

Accession	PRJNA729115
Data Type	Genome sequencing and assembly
Scope	Multiisolate
Organism	Escherichia coli[Taxonomy ID: 562] Bacteria; Pseudomonadota; Gammaproteobacteria; Enterobacterales; Enterobacteriaceae; Escherichia; Escherichia coli
Publications	Published online: White R et al., "Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli sequence type (ST)131 associated with bacteraemia in Wales, United Kingdom", name, 2021; Published online: White R et al., "Genomic epidemiology reveals geographical clustering of multidrug-resistant Escherichia coli ST131 associated with bacteraemia in Wales", Nature Communications, 2024;15(1)
Submission	Registration date: 25-May-2021 The University of Queensland
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	157
SRA Experiments	157
Other datasets
BioSample	157
Assembly	157

Assembly details:

Download

Assembly level

Number of Assemblies

Scaffold

Contig

Total

2
155
157

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_018491725.1	JAHBRR000000000	SAMN19110961	BA2082	Escherichia coli
GCA_018492645.1	JAHBMG000000000	SAMN19110869	BA1110	Escherichia coli
GCA_018492625.1	JAHBMF000000000	SAMN19110870	BA1112	Escherichia coli
GCA_018492605.1	JAHBME000000000	SAMN19110871	BA1123	Escherichia coli
GCA_018492575.1	JAHBMD000000000	SAMN19110872	BA1128	Escherichia coli
GCA_018492565.1	JAHBMB000000000	SAMN19110874	BA116	Escherichia coli
GCA_018492545.1	JAHBMC000000000	SAMN19110873	BA115	Escherichia coli
GCA_018492525.1	JAHBLZ000000000	SAMN19110876	BA1170	Escherichia coli
GCA_018492505.1	JAHBMA000000000	SAMN19110875	BA1165	Escherichia coli
GCA_018492485.1	JAHBLY000000000	SAMN19110877	BA1214	Escherichia coli
GCA_018492465.1	JAHBLW000000000	SAMN19110879	BA1243	Escherichia coli
GCA_018492445.1	JAHBLX000000000	SAMN19110878	BA1215	Escherichia coli
GCA_018492425.1	JAHBLV000000000	SAMN19110880	BA1256	Escherichia coli
GCA_018489425.1	JAHBGM000000000	SAMN19111021	BA901	Escherichia coli
GCA_018489385.1	JAHBGK000000000	SAMN19111023	BA910	Escherichia coli
GCA_018489365.1	JAHBGL000000000	SAMN19111022	BA909	Escherichia coli
GCA_018489375.1	JAHBGJ000000000	SAMN19111024	BA942	Escherichia coli
GCA_018491605.1	JAHBJK000000000	SAMN19110868	BA108	Escherichia coli
GCA_018491585.1	JAHBLI000000000	SAMN19110893	BA1341	Escherichia coli
GCA_018491565.1	JAHBLH000000000	SAMN19110894	BA1344	Escherichia coli
GCA_018491535.1	JAHBKX000000000	SAMN19110905	BA1404	Escherichia coli
GCA_018491525.1	JAHBKS000000000	SAMN19110910	BA1431	Escherichia coli
GCA_018491505.1	JAHBKP000000000	SAMN19110913	BA1442	Escherichia coli
GCA_018491485.1	JAHBKM000000000	SAMN19110916	BA1458	Escherichia coli
GCA_018491445.1	JAHBKN000000000	SAMN19110915	BA1447	Escherichia coli
GCA_018491455.1	JAHBKL000000000	SAMN19110917	BA1477	Escherichia coli
GCA_018491415.1	JAHBKK000000000	SAMN19110918	BA1482	Escherichia coli
GCA_018491405.1	JAHBKJ000000000	SAMN19110919	BA1490	Escherichia coli
GCA_018491385.1	JAHBKF000000000	SAMN19110923	BA1511	Escherichia coli
GCA_018491365.1	JAHBKG000000000	SAMN19110922	BA1509	Escherichia coli
GCA_018491345.1	JAHBKE000000000	SAMN19110924	BA1512	Escherichia coli
GCA_018491325.1	JAHBKD000000000	SAMN19110925	BA1517	Escherichia coli
GCA_018491295.1	JAHBJZ000000000	SAMN19110929	BA1553	Escherichia coli
GCA_018491275.1	JAHBKB000000000	SAMN19110927	BA1543	Escherichia coli
GCA_018491265.1	JAHBKC000000000	SAMN19110926	BA1542	Escherichia coli
GCA_018491245.1	JAHBKA000000000	SAMN19110928	BA155	Escherichia coli
GCA_018491215.1	JAHBJY000000000	SAMN19110930	BA156	Escherichia coli
GCA_018491205.1	JAHBJW000000000	SAMN19110932	BA1570	Escherichia coli
GCA_018491185.1	JAHBJX000000000	SAMN19110931	BA1561	Escherichia coli
GCA_018491155.1	JAHBJV000000000	SAMN19110933	BA1575	Escherichia coli
GCA_018491145.1	JAHBJU000000000	SAMN19110934	BA1581	Escherichia coli
GCA_018491125.1	JAHBJT000000000	SAMN19110935	BA1585	Escherichia coli
GCA_018491105.1	JAHBJS000000000	SAMN19110936	BA1588	Escherichia coli
GCA_018491075.1	JAHBJP000000000	SAMN19110939	BA1606	Escherichia coli
GCA_018491065.1	JAHBJR000000000	SAMN19110937	BA1593	Escherichia coli
GCA_018491035.1	JAHBJQ000000000	SAMN19110938	BA16	Escherichia coli
GCA_018491025.1	JAHBJO000000000	SAMN19110940	BA1637	Escherichia coli
GCA_018491005.1	JAHBJN000000000	SAMN19110941	BA164	Escherichia coli
GCA_018490955.1	JAHBJM000000000	SAMN19110942	BA166	Escherichia coli
GCA_018490945.1	JAHBJI000000000	SAMN19110945	BA176	Escherichia coli
GCA_018490925.1	JAHBJL000000000	SAMN19110943	BA167	Escherichia coli
GCA_018490935.1	JAHBJJ000000000	SAMN19110944	BA1688	Escherichia coli
GCA_018490905.1	JAHBJH000000000	SAMN19110946	BA177	Escherichia coli
GCA_018490885.1	JAHBJG000000000	SAMN19110947	BA178	Escherichia coli
GCA_018490865.1	JAHBJF000000000	SAMN19110948	BA1843	Escherichia coli
GCA_018490845.1	JAHBJD000000000	SAMN19110950	BA2000	Escherichia coli
GCA_018490825.1	JAHBJE000000000	SAMN19110949	BA187	Escherichia coli
GCA_018490805.1	JAHBJB000000000	SAMN19110953	BA2056	Escherichia coli
GCA_018490785.1	JAHBJC000000000	SAMN19110951	BA203	Escherichia coli
GCA_018490765.1	JAHBJA000000000	SAMN19110954	BA2057	Escherichia coli
GCA_018490745.1	JAHBIX000000000	SAMN19110957	BA2078	Escherichia coli
GCA_018490725.1	JAHBIZ000000000	SAMN19110955	BA2065	Escherichia coli
GCA_018490705.1	JAHBIY000000000	SAMN19110956	BA2075	Escherichia coli
GCA_018490685.1	JAHBIV000000000	SAMN19110959	BA2080	Escherichia coli
GCA_018490665.1	JAHBIW000000000	SAMN19110958	BA2079	Escherichia coli
GCA_018490645.1	JAHBIU000000000	SAMN19110960	BA2081	Escherichia coli
GCA_018490615.1	JAHBIT000000000	SAMN19110962	BA2088	Escherichia coli
GCA_018490605.1	JAHBIS000000000	SAMN19110963	BA2090	Escherichia coli
GCA_018490575.1	JAHBIQ000000000	SAMN19110965	BA2097	Escherichia coli
GCA_018490565.1	JAHBIR000000000	SAMN19110964	BA2091	Escherichia coli
GCA_018490545.1	JAHBIP000000000	SAMN19110966	BA2098	Escherichia coli
GCA_018490525.1	JAHBIO000000000	SAMN19110967	BA210	Escherichia coli
GCA_018490495.1	JAHBIM000000000	SAMN19110969	BA2105	Escherichia coli
GCA_018490485.1	JAHBIN000000000	SAMN19110968	BA2102	Escherichia coli
GCA_018490465.1	JAHBIL000000000	SAMN19110970	BA2112	Escherichia coli
GCA_018490445.1	JAHBIK000000000	SAMN19110971	BA2113	Escherichia coli
GCA_018490425.1	JAHBIJ000000000	SAMN19110972	BA2121	Escherichia coli
GCA_018490405.1	JAHBIG000000000	SAMN19110975	BA2134	Escherichia coli
GCA_018490385.1	JAHBII000000000	SAMN19110973	BA2123	Escherichia coli
GCA_018490365.1	JAHBIH000000000	SAMN19110974	BA2133	Escherichia coli
GCA_018490345.1	JAHBIF000000000	SAMN19110976	BA264	Escherichia coli
GCA_018490325.1	JAHBIE000000000	SAMN19110977	BA306	Escherichia coli
GCA_018490305.1	JAHBIB000000000	SAMN19110980	BA352	Escherichia coli
GCA_018490285.1	JAHBIC000000000	SAMN19110979	BA337	Escherichia coli
GCA_018490265.1	JAHBID000000000	SAMN19110978	BA307	Escherichia coli
GCA_018490245.1	JAHBIA000000000	SAMN19110981	BA377	Escherichia coli
GCA_018490215.1	JAHBHY000000000	SAMN19110983	BA392	Escherichia coli
GCA_018490205.1	JAHBHZ000000000	SAMN19110982	BA389	Escherichia coli
GCA_018490175.1	JAHBHX000000000	SAMN19110984	BA394	Escherichia coli
GCA_018490165.1	JAHBHW000000000	SAMN19110985	BA397	Escherichia coli
GCA_018490145.1	JAHBHU000000000	SAMN19110987	BA412	Escherichia coli
GCA_018490115.1	JAHBHS000000000	SAMN19110989	BA418	Escherichia coli
GCA_018490085.1	JAHBHR000000000	SAMN19110990	BA42	Escherichia coli
GCA_018490075.1	JAHBHT000000000	SAMN19110988	BA417	Escherichia coli
GCA_018490065.1	JAHBHV000000000	SAMN19110986	BA408	Escherichia coli
GCA_018490035.1	JAHBHQ000000000	SAMN19110991	BA43	Escherichia coli
GCA_018490015.1	JAHBHN000000000	SAMN19110994	BA437	Escherichia coli
GCA_018490005.1	JAHBHO000000000	SAMN19110993	BA435	Escherichia coli
GCA_018489985.1	JAHBHM000000000	SAMN19110995	BA44	Escherichia coli
GCA_018489965.1	JAHBHP000000000	SAMN19110992	BA434	Escherichia coli
GCA_018489945.1	JAHBHL000000000	SAMN19110996	BA440	Escherichia coli
GCA_018489905.1	JAHBHH000000000	SAMN19111000	BA464	Escherichia coli
GCA_018489885.1	JAHBHI000000000	SAMN19110999	BA461	Escherichia coli
GCA_018489875.1	JAHBHK000000000	SAMN19110997	BA445	Escherichia coli
GCA_018489865.1	JAHBHJ000000000	SAMN19110998	BA446	Escherichia coli
GCA_018489845.1	JAHBHG000000000	SAMN19111001	BA47	Escherichia coli
GCA_018489825.1	JAHBHF000000000	SAMN19111002	BA487	Escherichia coli
GCA_018489805.1	JAHBHD000000000	SAMN19111004	BA494	Escherichia coli
GCA_018489765.1	JAHBHE000000000	SAMN19111003	BA490	Escherichia coli
GCA_018489775.1	JAHBHB000000000	SAMN19111006	BA497	Escherichia coli
GCA_018489745.1	JAHBHA000000000	SAMN19111007	BA515	Escherichia coli
GCA_018489725.1	JAHBHC000000000	SAMN19111005	BA496	Escherichia coli
GCA_018489695.1	JAHBGY000000000	SAMN19111009	BA523	Escherichia coli
GCA_018489685.1	JAHBGZ000000000	SAMN19111008	BA517	Escherichia coli
GCA_018489645.1	JAHBGX000000000	SAMN19111010	BA575	Escherichia coli
GCA_018489655.1	JAHBGW000000000	SAMN19111011	BA655	Escherichia coli
GCA_018489625.1	JAHBGU000000000	SAMN19111013	BA68	Escherichia coli
GCA_018489595.1	JAHBGT000000000	SAMN19111014	BA694	Escherichia coli
GCA_018489585.1	JAHBGV000000000	SAMN19111012	BA669	Escherichia coli
GCA_018489565.1	JAHBGS000000000	SAMN19111015	BA70	Escherichia coli
GCA_018489545.1	JAHBGR000000000	SAMN19111016	BA730	Escherichia coli
GCA_018489515.1	JAHBGP000000000	SAMN19111018	BA829	Escherichia coli
GCA_018489505.1	JAHBGO000000000	SAMN19111019	BA871	Escherichia coli
GCA_018489485.1	JAHBGN000000000	SAMN19111020	BA876	Escherichia coli
GCA_018489465.1	JAHBGQ000000000	SAMN19111017	BA810	Escherichia coli
GCA_018492405.1	JAHBLT000000000	SAMN19110882	BA1274	Escherichia coli
GCA_018492385.1	JAHBLU000000000	SAMN19110881	BA1257	Escherichia coli
GCA_018492365.1	JAHBLS000000000	SAMN19110883	BA1275	Escherichia coli
GCA_018492345.1	JAHBLR000000000	SAMN19110884	BA1279	Escherichia coli
GCA_018492325.1	JAHBLQ000000000	SAMN19110885	BA1287	Escherichia coli
GCA_018492305.1	JAHBLO000000000	SAMN19110887	BA1293	Escherichia coli
GCA_018492285.1	JAHBLP000000000	SAMN19110886	BA1292	Escherichia coli
GCA_018492265.1	JAHBLN000000000	SAMN19110888	BA1295	Escherichia coli
GCA_018492245.1	JAHBLM000000000	SAMN19110889	BA130	Escherichia coli
GCA_018492225.1	JAHBLL000000000	SAMN19110890	BA1320	Escherichia coli
GCA_018492205.1	JAHBLK000000000	SAMN19110891	BA1327	Escherichia coli
GCA_018492185.1	JAHBLG000000000	SAMN19110895	BA1345	Escherichia coli
GCA_018492155.1	JAHBLE000000000	SAMN19110897	BA1353	Escherichia coli
GCA_018492145.1	JAHBLJ000000000	SAMN19110892	BA133	Escherichia coli
GCA_018492125.1	JAHBLF000000000	SAMN19110896	BA1347	Escherichia coli
GCA_018492105.1	JAHBLC000000000	SAMN19110899	BA1368	Escherichia coli
GCA_018492085.1	JAHBLB000000000	SAMN19110900	BA1387	Escherichia coli
GCA_018492065.1	JAHBLD000000000	SAMN19110898	BA1355	Escherichia coli
GCA_018492035.1	JAHBRT000000000	SAMN19110902	BA1391	Escherichia coli
GCA_018492025.1	JAHBLA000000000	SAMN19110901	BA1390	Escherichia coli
GCA_018491995.1	JAHBKY000000000	SAMN19110904	BA1397	Escherichia coli
GCA_018491985.1	JAHBKZ000000000	SAMN19110903	BA1393	Escherichia coli
GCA_018491965.1	JAHBKW000000000	SAMN19110906	BA1408	Escherichia coli
GCA_018491945.1	JAHBKV000000000	SAMN19110907	BA1413	Escherichia coli
GCA_018491925.1	JAHBKU000000000	SAMN19110908	BA1418	Escherichia coli
GCA_018491905.1	JAHBKT000000000	SAMN19110909	BA1422	Escherichia coli
GCA_018491875.1	JAHBKR000000000	SAMN19110911	BA1435	Escherichia coli
GCA_018491855.1	JAHBKQ000000000	SAMN19110912	BA1441	Escherichia coli
GCA_018491835.1	JAHBRS000000000	SAMN19110952	BA2055	Escherichia coli
GCA_018491825.1	JAHBKO000000000	SAMN19110914	BA1446	Escherichia coli
GCA_018491805.1	JAHBKI000000000	SAMN19110920	BA1496	Escherichia coli
GCA_018491775.1	JAHBKH000000000	SAMN19110921	BA1507	Escherichia coli

SRA Data Details

Parameter	Value
Data volume, Gbases	52
Data volume, Mbytes	24752

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Escherichia coli

Using whole-genome sequencing to characterise Escherichia coli associated with bacteraemia from Wales, United Kingdom

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