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1.

Antenatal Glucocorticoid Exposure Induced Neurodegenerative Changes in the Fetal Ovine Hippocampal Transcriptome Independent of Pulmonary Immaturity

Organism:
Ovis aries
Taxonomy:
Ovis aries (sheep)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Bioinformatics Consulting and Training Platform, Genome Institute of Singapore
Accession:
PRJNA1046009
ID:
1046009
2.

Single-cell Analysis of Subcutaneous Fat Reveals Pro-fibrotic Cells that Correlate with Visceral Adiposity in HIV

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Vanderbilt Universit Medical Center
Accession:
PRJNA1020791
ID:
1020791
3.

Knockdown of Plasmodium falciparum Jumonji C2 histone demethylase leads to a global perturbance of gene expression but does not alter var gene transcription

Organism:
Plasmodium falciparum
Taxonomy:
Plasmodium falciparum (malaria parasite P. falciparum)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
UDD/lab 7, Institute for Biomedical Sciences, University of São Paulo
Accession:
PRJNA948032
ID:
948032
4.

Total RNA sequencing reveals gene expression and microbial alterations shared by oral pre-malignant lesions and cancer.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Monti Lab, Medicine, Boston University Chobanian & Avedisian School of Medicine
Accession:
PRJNA947509
ID:
947509
5.

miRNA profiling from peripheral white blood cells in fertile and subfertile beef heifers at weaning

Organism:
Bos taurus
Taxonomy:
Bos taurus (domestic cattle)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Reproductive and Developmental Biology, Animal Science, Auburn University
Accession:
PRJNA937719
ID:
937719
6.

Gene expression profiling in Inflammatory Bowel Disease identifies characteristics for anti-TNF-alpha response and targets for alternative therapies

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB42204
ID:
768013
7.

RNA-seq of biopsies from the colons of patients with Crohn's Disease classified as healed versus non-healed according to different classification scores

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB41167
ID:
768009
8.

Comparison of the gene expression profiles of strictured and non-srictured colonic tissue from patients with stricturing Crohn's disease

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB41022
ID:
768008
9.

RNAseq reveals differential gene expression contributing to Phytophthora nicotianae adaptation to partial resistance in tobacco

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
Entomology and Plant Pathology, North Carolina State University
Accession:
PRJNA707596
ID:
707596
10.

Cervical cancer stem-like cell transcriptome profiles predict response to chemoradiotherapy

Project data type: Raw sequence reads
Scope:
Multispecies
Instituto Mario Penna
Accession:
PRJNA705088
ID:
705088
11.

RNA-seq of biopsies from the bowels of patients with Ulcerative Colitis classified as healed versus non-healed according to different classification scores

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB41128
ID:
689182
12.

Transcriptom analysis of normal and Slug overexpressing human endothelial cells in a 3D fibrin-gel bead angiogenesis assay

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of California, Irvine
Accession:
PRJNA646640
ID:
646640
13.

Peptide 1018 disrupts swarming and the swarming-associated, anr-mediated metabolic program of Pseudomonas aeruginosa

Taxonomy:
Pseudomonas aeruginosa UCBPP-PA14
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Amy Lee, Molecular Biology and Biochemistry, Simon Fraser University
Accession:
PRJNA635354
ID:
635354
14.

Screening of differentially expressed genes in three Plasmodium falciparum parasite lines [RNA-seq]

Organism:
Plasmodium falciparum
Taxonomy:
Plasmodium falciparum (malaria parasite P. falciparum)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Tropical diseases,, Second Military Medical University, Shanghai, China.
Accession:
PRJNA592366
ID:
592366
15.

Next-generation sequencing analyses of the differently expressed genes of wild type, PtomitAPX-antisense and PtomitAPX-overexpression transgenic suspension cells

Taxonomy:
Populus tomentosa
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Beijing Forestry University
Accession:
PRJNA497798
ID:
497798
16.

JAK2V617F but not CALR mutations confer increased molecular responses to interferon-alpha via JAK1/STAT1 activation

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
IZKF Aachen, RWTH Aachen University
Accession:
PRJNA492885
ID:
492885
17.

Transcriptome changes caused by RBP-P mutations in rice seed

Organism:
Oryza sativa
Taxonomy:
Oryza sativa (Asian cultivated rice)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Thomas Okita, IBC, Washington State University
Accession:
PRJNA481311
ID:
481311
18.

Transcriptome Discovery of the Survived WSSV-challenged P. monodon

Project data type: Raw sequence reads
Scope:
Multispecies
Univesity of Malaya
Accession:
PRJNA480909
ID:
480909
19.

Homo sapiens

Dissecting tumor/stroma pretreatment endoscopic biopsies and posttreatment surgical specimen in rectal cancer

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
PROCURE, ICO
Accession:
PRJNA360831
ID:
360831
20.

Streptococcus pneumoniae

Changes in relative transcript amounts caused by the addition of mitomycin C in Streptococcus pneumoniae

Taxonomy:
Streptococcus pneumoniae
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Nuffield Department of Medicine, University of Oxford
Accession:
PRJNA350648
ID:
350648

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