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1.

Identifying crossover locations from pollen of Arabidopsis thaliana Col x Ler F1 plants (WT and recq4) using Nanopore-seq and COmapper

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB79134
ID:
1151485
2.

RIP-seq identification of RNAs enriched on RNA polymerase and the primary sigma factor (sigma A) in Mycobacterium tuberculosis

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB70787
ID:
1084435
3.

RIP-seq identification of RNAs enriched on RNA polymerase and the primary sigma factor (sigma A) in Mycobacterium tuberculosis

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB57203
ID:
1084369
4.

Particle uptake by macrophages triggers bifurcated transcriptional pathways that differentially regulate inflammation and lysosomal gene expression.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Glass Lab, CMM, University of California, San Diego
Accession:
PRJNA1079273
ID:
1079273
5.

Marker Frequency Analysis of Vibrio cholerae E7946 mutants (YAV20, AB14 and AB23)

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB60455
ID:
1076436
6.

Tangeretin alleviates LPS-induced acute lung injury by inhibiting ferroptosis of macrophage via Nrf2 pathways

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Xinhua Hospital Affiliated to Shanghai Jiaotong University School of Medicine, Shanghai, China.
Accession:
PRJNA1062399
ID:
1062399
7.

Wild type (WT) and Aconitate decarboxylase 1 knockout (Acod1-/-) BMDM treated with Imiquimod for 12h

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Systemic Autoimmunity Branch, NIAMS, NIH
Accession:
PRJNA1053787
ID:
1053787
8.

Active forms of vitamin D as preventive and therapeutic agents in cutaneous melanoma: review and perspective

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Dermatology, UAB
Accession:
PRJNA1045533
ID:
1045533
9.

Comparative transcriptome analysis reveals molecular damage associated with cryopreservation in Crassostrea angulata D-larvae rather than to cryoprotectant exposure

Taxonomy:
Magallana angulata
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
1.8, Aquaculture research group (Aquagroup), Centre of Marine Sciences (CCMAR)
Accession:
PRJNA1035107
ID:
1035107
10.

SHAPE-Seq of human U2 snRNA and U4 pre-snRNA

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB65050
ID:
1032829
11.

Dual RNA sequencing of Helicobacter pylori and host cell transcriptomes reveals ontologically distinct host-pathogen interaction

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
Shenzhen Hospital of Southern Medical University
Accession:
PRJNA1018440
ID:
1018440
12.

CDK12 prevents MYC-induced transcription-replication conflicts [EdU-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Cancer Biology, Center for Genomic Science, fondazione Istituto italiano di tecnologia
Accession:
PRJNA991567
ID:
991567
13.

CDK12 prevents MYC-induced transcription-replication conflicts [BLISS]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Other
Scope:
Multiisolate
Cancer Biology, Center for Genomic Science, fondazione Istituto italiano di tecnologia
Accession:
PRJNA991555
ID:
991555
14.

CDK12 prevents MYC-induced transcription-replication conflicts [EU-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Cancer Biology, Center for Genomic Science, fondazione Istituto italiano di tecnologia
Accession:
PRJNA991554
ID:
991554
15.

Sexually dimorphic impact of constitutive androstane receptor activation in mouse liver

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
TOXALIM, INRAe
Accession:
PRJNA950344
ID:
950344
16.

miR-324 regulates both osteoblast and osteoclast differentiation and function to control bone homeostasis  

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Newcastle University
Accession:
PRJNA940814
ID:
940814
17.

Tumor-associated macrophages respond to chemotherapy by detrimental transcriptional reprogramming and suppressing stabilin-1 mediated clearance of EGF

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Laboratory of Translational Cellular and Molecular Biomedicine, Tomsk State University
Accession:
PRJNA932034
ID:
932034
18.

FUBP1 is a core splicing factor that facilitates 3' splice site recognition and splicing of long introns [In vivo iCLIP]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Koenig Lab, Institute of Molecular Biology
Accession:
PRJNA909189
ID:
909189
19.

Transcriptome of ZmPMP3g overexpressing maize inbred line Ye478, and wild type Ye478 under control, moderate drought, exogenous abscisic acid, or treatment combinations

Taxonomy:
Zea mays
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
College of Life Science and Technology, Guangxi University
Accession:
PRJNA908834
ID:
908834
20.

Nanostring transcriptomic analysis of M(M-CSF) (M2-like) macrophages treated with antiChemR23 agonist or untreated.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
OSE IMMUNOTHERAPEUTICS
Accession:
PRJNA903165
ID:
903165

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