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Organizing biological data
Klebsiella pneumoniae strain:KP3762_2
Klebsiella pneumoniae strain:KP3762_2 Genome sequencing
Klebsiella pneumoniae strain:KP3755_2
Klebsiella pneumoniae strain:KP3755_2 Genome sequencing
Lactobacillus sp.
Formyl-Peptide Receptor 2 activating probiotic Lactobacilli
Effect of Si-711, a dual sirtuin 1 and 2 inhibitor, on gene expression in chronic myeloid leukemia K-562 cells
3' RACE-seq of endogenous LINE-1 mRNA's 3' non-templated ends in PA-1 control kd, XRN1 kd, DCP2 kd, and DIS3L2 kd (kd by RNAi for 48h = set 1, or 126h = set 2), and 293T wild-type and XRN1 KO.
FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma [Bisulfite-Seq]
FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma [RNA-Seq]
FoxA1/2-dependent epigenomic reprogramming drives lineage switching in lung adenocarcinoma [ChIP-seq]
Motif-enrichment analysis identified binding sites for XBP1s in Neo-2/15 stimulated BBζ NK cells following co-cultured with AsPC-1 cells
Characterization of plasmids carrying blaKPC-2 and blaNDM-1 in K. pneumoniae
WSB1/2 target chromatin-bound lysine-methylated RelA for proteasomal degradation and NF-κB termination
CoMVseq
Genomic epidemiology of SARS-CoV-2 variants circulating in a German federal state, Mecklenburg-Western Pomerania, in 2020-2022
Rice paddy soil microbiome 16S rRNA: Household biomass ash as a fertilizer to sustainability
16S-soil-ash-Bangladesh, Here we investigated in large scale field trials across two geographic regions and two seasons, if domestic hearth ash can be used as a fertilizer for paddy rice cultivation, how geographic, season and application of household ash to soil impact on rice yield, and grain quality (accumulation of As, Cd, alongside nutrient elements) and rhizosphere soil microbial composition. The study was conducted in 9 homesteads each for two geographic regions (Madhupur & Barind tract), over two seasons (wet &dry). In each season, the following 3 treatments were applied: 1=control (conventional NKPS), 2= Ash (ash to supply all required P plus urea and K), 3 =control plus ash (1 t ash per ha plus conventional NPKS). At the end of each season, grain yield, mineral elements in grain (ICP-MS) and rhizosphere soil microbial community (16S rRNA amplicon sequencing, Illumina) were assessed and at the end of the overall experiment the overall impact on mineral elements in soil (XRF) evaluated.
mRNA expression data from RalGAPβ-deficient human pancreatic ductal adenocarcinoma cells (MIA PaCa-2), MIA PaCa-2 parental cells, and MIA PaCa-2 control cells
SARS-CoV-2 Niches in Human Placenta Revealed by Spatial Transcriptomics
The transcriptome-wide mapping of 2-methylthio-N6-isopentenyladenosine at single-base resolution by ReACT-seq
mcr-1-Positive Enterobacteriaceae in Russia
Analysis of 22 E.coli and 2 K.pneumoniae isolates with plasmid-borne mcr-1.1 gene.
Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants (pcHiC)
Spatial transcriptome uncovers rich coordination of metabolism and signaling in bacterial community (data 2)
Identification of cross-species preserved cis-regulatory elements containing type 2 diabetes GWAS variants
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