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Organizing biological data
Self-organised pattern formation in the developing dorsal neural tube by a temporal relay of BMP signalling
Transcriptomics, Regulatory Syntax, and Enhancer Identification in Heterogenous Populations of Mesoderm-Induced ESCs at Single-Cell Resolution
Cleavage of histone H2A during embryonic stem cell differentiation destabilizes nucleosomes to counteract gene activation [ARID2 and PBRM1 ChIP-seq]
Live-cell 3D single-molecule tracking reveals how NuRD modulates enhancer dynamics
New Pathogenesis Mechanisms and Translational Leads Identified by Multidimensional Analysis of Necrotizing Myositis in Primates
Transcriptional profiling of endothelial cells in the cerebral cortex of a Abcb1a-TRAP (ES3026) mouse line
REV-ERBa and REV-ERBb function as key factors regulating Mammalian Circadian Output
RNA sequencing profiles of B progenitor cells derived from mouse ES cell, Yolk sac, fetal liver, and adult bone marrow.
Leishmania infantum JPCM5 de novo assembly
In this project, we have sequenced again the genome of Leishmania infantum JPCM5 strain by the use of two NGS technologies: Illumina sequencing and single-molecule, real-time sequencing (Pacific Biosciences, PacBio). Note that Illumina sequencing library was divided into two sequencing lines, and two pairs of paired-reads will be provided for the same sample. (SAMEA103958196 and SAMEA103958197).
Mus musculus
ChAHP (Adnp, Chd4, HP1) mediates sequence-specific recruitment of HP1 independent of H3K9 methylation
DNA-Binding Mutant EAAE-ER alpha Genome-Wide Binding in the Uterus
High-coverage re-sequencing of HT-SELEX libraries
Additional sequencing coverage for the study by Jolma et al 2013, “DNA-binding specificities of human Transcription factors. This new deeper sequencing data has been used in the publication "Transcription factor family‐specific DNA shape readout revealed by quantitative specificity models”
An inducible and reversible embryonic stem cell biobank reveals functional genomic pathways and disease targets [iPCR/BC-PCR]
The non-CG methylation is cell-type specific and conserved between human and mouse [Third-party reanalysis]
SMAD2/3 potentiate cell identity conversions with master transcription factors
PAR-TERRA RNA directs homologous sex chromosome pairing
Homo sapiens
Exon expression for NCI Sarcoma cell line panel
microRNA expression profiling of human sarcoma cell lines (~68) in the Molecular Pharmacology Branch, DTP, DCTD NCI collection of human cell lines
Human pluripotent stem cell-derived neural constructs for predictive neurotoxicity screening
Esrrb Regulates Specific Feed-Forward Loops to Transit from Pluripotency into Early Stages of Differentiation
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