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1.

Fusobacterium nucleatum infection modulates the transcriptome and epigenome of colon cancer cells in an oxygen-dependent manner [RNA-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Chang Lu, Chemical Engineering, Virginia Tech
Accession:
PRJNA1033854
ID:
1033854
2.

Fusobacterium nucleatum infection modulates the transcriptome and epigenome of colon cancer cells in an oxygen-dependent manner [ChIP-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Chang Lu, Chemical Engineering, Virginia Tech
Accession:
PRJNA1033852
ID:
1033852
3.

Fusobacterium nucleatum

Genome sequences of Fusobacterium nucleatum isolates obtained from patients with colorectal cancer

Taxonomy:
Fusobacterium nucleatum
Project data type: Genome sequencing
Scope:
Multiisolate
Laboratory for Microbiome Sciences, Center for Integrative Medical Sciences, RIKEN
Accession:
PRJDB16243
ID:
1010555
4.

Single-cell transcriptomics suggest distinct upstream drivers of IL-17A/F in hidradenitis versus psoriasis

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Laboratory for Investigative Dermatology, Rockefeller University
Accession:
PRJNA912600
ID:
912600
5.

Transcriptomics profiling of ccc_R08 for mechanism-of-action investigation with forward pharmacology

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Bioinformatics and Exploratory Data Analysis, Roche Pharmaceutical Research and Early Development, Roche Innovation Center Basel, F. Hoffmann-La Roche
Accession:
PRJNA885789
ID:
885789
6.

Lactiplantibacillus plantarum strain:WUH3

Lactiplantibacillus plantarum strain:WUH3 Genome sequencing and assembly

Taxonomy:
Lactiplantibacillus plantarum
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Shanghai Ocean University
Accession:
PRJNA809076
ID:
809076
8.

The LysR-type transcriptional regulator VtlR/LsrB controls expression of multiple small RNA and small protein genes in Agrobacterium tumefaciens

Taxonomy:
Agrobacterium fabrum str. C58
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Microbial Biology, Ruhr University Bochum
Accession:
PRJNA670952
ID:
670952
9.

A naturally heteroplasmic clam shows the effects of genetic bottleneck on paternal mtDNA

Project data type: Raw sequence reads
Scope:
Multispecies
University of Bologna
Accession:
PRJNA639707
ID:
639707
10.

Neocosmospora and Fusarium spp. in ornamental plants

Soilborne diseases caused by Fusarium and Neocosmospora spp. on ornamental plants in Italy

Project data type: Other
Scope:
Monoisolate
Westerdijk Fungal Biodiversity Institute
Accession:
PRJEB26697
ID:
549199
11.
12.
13.

Differential gene expression analysis of MYCN-amplified neuroblastoma cells after Doxycycline inducible shRNA knockdown of JMJD6 gene expression

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
histone modification group, Children's Cancer Institute
Accession:
PRJNA449495
ID:
449495
14.

Caenorhabditis elegans

Nuclear RNAi Contributes to the Silencing of Off-target Genes and Repetitive Sequences in Caenorhabditis elegans

Taxonomy:
Caenorhabditis elegans
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
School of Life Sciences, University of Science & Technology of China
Accession:
PRJNA357193
ID:
357193
15.

Arabidopsis thaliana

sRNA drives epigenetic changes in F1 hybrids

Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Other
Scope:
Multiisolate
csiro
Accession:
PRJNA338792
ID:
338792
16.

Fusarium oxysporum

Transcriptomic analysis of F. oxysporum Δcon7-1 mutant during in vitro growth

Taxonomy:
Fusarium oxysporum
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Genetics, University of Cordoba
Accession:
PRJNA255040
ID:
255040
17.

RESPTUL

Genomic epidemiology of a respiratory tularemia outbreak

Project data type: Other
Scope:
Monoisolate
Swedish Defence Research Agency
Accession:
PRJEB4697
ID:
237175
18.

Homo sapiens

Evaluation of the robustness of classification of carcinogen-modified transcriptomic responses in HepaRG cells and the interlaboratory reproducibility of the model

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
FAFY, VUB
Accession:
PRJNA221339
ID:
221339
19.

Drosophila melanogaster

Genotype-by-diet interaction effects on transcriptome profiles in Drosophila melanogaster

Taxonomy:
Drosophila melanogaster (fruit fly)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Reed, Biological Sciences, University of Alabama
Accession:
PRJNA219624
ID:
219624
20.

Diversity of MRSA II

Project data type: Other
Scope:
Monoisolate
Wellcome Sanger Institute
Accession:
PRJEB2686
ID:
204414

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