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Items: 19

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1.

Transcriptome and proteome profiling reveals TREM2-dependent and -independent glial response and metabolic perturbation in an Alzheimer’s mouse model

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Gao Lab, The Department of Neuroscience, The Ohio State University
Accession:
PRJNA1171003
ID:
1171003
2.

Gut microbiota in rainbow trout Oncorhynchus mykiss with different susceptibility to Flavobacterium psychrophilum infection

Project data type: Raw sequence reads
Scope:
Multispecies
University of Copenhagen
Accession:
PRJNA1166114
ID:
1166114
3.

Single-cell RNA-seq dictionary of in vivo immune responses to cytokines

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Broad Institute
Accession:
PRJNA834959
ID:
834959
4.

Clr-f expression regulates kidney immune and metabolic homeostasis

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Dalhousie University
Accession:
PRJNA816926
ID:
816926
5.

Single-cell transcriptome and cell-specific network analysis reveal the reparative effect of NT-4 supplementation in preantral follicles grown in vitro [gc_RNA-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Sixth Affiliated Hospital of Sun Yat-sen University
Accession:
PRJNA736862
ID:
736862
6.

Single-cell transcriptome and cell-specific network analysis reveal the reparative effect of NT-4 supplementation in preantral follicles grown in vitro [oocyte_RNA-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Sixth Affiliated Hospital of Sun Yat-sen University
Accession:
PRJNA736481
ID:
736481
7.

Cervical mucosa exposed to free and complement opsonized HIV

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Linköping University
Accession:
PRJNA674381
ID:
674381
8.

High-Throughput Analysis of Lung Immune Cells in a Combined Murine Model of Agriculture Dust-Triggered Airway Inflammation with Rheumatoid Arthritis

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Internal Medicine-Allergy, University of Nebraska Medical Center
Accession:
PRJNA649761
ID:
649761
9.

Autocrine vitamin D signaling switches off pro-inflammatory programs of Th1 cells

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Other
Scope:
Multiisolate
Immunoregulation Section, Kidney Diseases Branch, National Institutes of Diabetes, Digestive, and Kidney Diseases
Accession:
PRJNA647352
ID:
647352
10.

Spatial Transcriptomics and In Situ Sequencing to Study Alzheimer’s Disease

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Laboratory for the research of neurodegenerative diseases, Centre for Brain and Disease research, VIB - KU Leuven
Accession:
PRJNA643227
ID:
643227
11.

Fusarium oxysporum f. sp. pisi

Fusarium oxysporum f. sp. pisi Genome sequencing and assembly

Taxonomy:
Fusarium oxysporum f. sp. pisi
Project data type: Genome sequencing and assembly
Scope:
Multiisolate
University of Greenwich
Accession:
PRJNA641642
ID:
641642
12.

Codependency and mutual exclusivity for gene community detection from sparse single-cell transcriptome data

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Institute of Medical Science, The University of Tokyo
Accession:
PRJNA604221
ID:
604221
13.

Downregulation of N-terminal initiator methionine imprinting by NatB impacts growth and the response to osmotic stress in Arabidopsis

Organism:
Arabidopsis thaliana
Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
ZMF, University Heidelberg
Accession:
PRJNA549616
ID:
549616
14.

Neuro-specific HuR-deficient mice spontaneously develop motor neuron disease

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Xiaoxia Li, Immunology, Cleveland Clinic Foundation
Accession:
PRJNA448705
ID:
448705
15.

Relaxin reverses inflammatory and immune signals in aged hearts

Organism:
Rattus norvegicus
Taxonomy:
Rattus norvegicus (Norway rat)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Salama, Bioengineering, University of Pittsburgh
Accession:
PRJNA416509
ID:
416509
16.

Danio rerio

Mitochondrial dysfunction, disruption of F-actin polymerization, and transcriptomic alterations in zebrafish larvae exposed to trichloroethylene

Taxonomy:
Danio rerio (zebrafish)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
School of Health Sciences, Purdue University
Accession:
PRJNA295317
ID:
295317
17.

Homo sapiens

Metabolic and gene expression changes induced by the naturally occurring ΔNp53 isoform link mTOR pathway and mitochondrial alterations to the progeroid phenotype.

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Dr. Dylan Taatjes, Chemistry and Biochemistry, University of Colorado at Boulder
Accession:
PRJNA159167
ID:
159167
18.

Mus musculus

Gene expression profiling of novel antigen presenting cells (APC) inducing pathogenic T helper cells of lupus

Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Northwestern Univ.
Accession:
PRJNA153017
ID:
153017
19.

Fusarium verticillioides

EST sequencing

Taxonomy:
Fusarium verticillioides
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
USDA /Agricultural Research Service (ARS)
Accession:
PRJNA18359
ID:
18359

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