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1.

Tyzzerella

Horizontal gene transfer shapes pathogenic bacteria in multiple sclerosis_bacterial genome

Taxonomy:
Tyzzerella
Project data type: Genome sequencing
Scope:
Multiisolate
Laboratory for Microbiome Sciences Center for Integrative Medical Sciences, RIKEN
Accession:
PRJDB17277
ID:
1176059
2.

Vibrio alginolyticus strain:15-TSA-B2

Vibrio alginolyticus strain:15-TSA-B2 Genome sequencing

Taxonomy:
Vibrio alginolyticus
Project data type: Genome sequencing
Scope:
Monoisolate
Bursa Uludag University, Faculty of Veterinary Medicine
Accession:
PRJNA1172974
ID:
1172974
3.

Vibrio alginolyticus strain:11-TSA-B2

Vibrio alginolyticus strain:11-TSA-B2 Genome sequencing

Taxonomy:
Vibrio alginolyticus
Project data type: Genome sequencing
Scope:
Monoisolate
Bursa Uludag University, Faculty of Veterinary Medicine
Accession:
PRJNA1172970
ID:
1172970
5.

Effect of EphrinB2 on gene expression in cultured lymphatic endothelial cells (LECs) under hypoxia

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Zhongshan Hospital, Fudan University
Accession:
PRJNA1171864
ID:
1171864
6.

Isolation and characterization of Cytobacillus kochii from marine environment

Cytobacillus kochii from marine environment

Project data type: Other
Scope:
Monoisolate
Center of Excellence in Environmental Studies
Accession:
PRJEB80211
ID:
1171300
7.

The bacterial metagenome of Schizaphis graminum

Project data type: Raw sequence reads
Scope:
Multispecies
USDA-ARS-MWA
Accession:
PRJNA1170337
ID:
1170337
8.

Sixteen activated sludge and biofilm samples from a wastewater treatment plant

Project data type: Raw sequence reads
Scope:
Multispecies
Qingdao University of Technology
Accession:
PRJNA1158321
ID:
1158321
9.

WGS of clinical Escherichia coli isolates from maternity wards of Russian hospitals

Project data type: Genome sequencing
Scope:
Multispecies
Central Research Institute of Epidemiology
Accession:
PRJNA1151703
ID:
1151703
10.

Phosphatidylserine phospholipase A1 enables GPR34-dependent immune cell accumulation in the peritoneal cavity

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Cyster Lab, UCSF
Accession:
PRJNA1147582
ID:
1147582
11.

Homo sapiens strain:human SFTPC-GFP 201B7 iPSC reporter line (B2-3)

Generation of ACE2 knockout human iPSCs and their differentiation into airway and alveolar epithelial cells in air-liquid interface culture

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Center for iPS Cell Research and Application
Accession:
PRJDB15620
ID:
1146584
12.

RNAseq of leaf tissue of Medicago truncatula R108 WT and mtftb1/2 gene-edited double mutant at two different developmental stages and vernalised conditions

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB69307
ID:
1143302
13.

3+2 generation transcriptome sequencing of Elymus sibiricus related with flowering time

Project data type: Raw sequence reads
Scope:
Multispecies
Lanzhou University
Accession:
PRJNA1139409
ID:
1139409
14.

Bacillus amyloliquefaciens strain:B2

Bacillus amyloliquefaciens strain:B2 Genome sequencing

Taxonomy:
Bacillus amyloliquefaciens
Project data type: Genome sequencing
Scope:
Monoisolate
CAES
Accession:
PRJNA1127546
ID:
1127546
15.

Endolysosomal dysfunction in radial glia progenitor cells leads to defective cerebral angiogenesis and compromised Blood-Brain Barrier integrity

Organism:
Danio rerio
Taxonomy:
Danio rerio (zebrafish)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Karina Yaniv lab, Immunology and Regenerative Biology, Weizmann Institute of Science
Accession:
PRJNA1126173
ID:
1126173
16.

Set7: ERCC bulk short-read RNA-seq by Illumina NextSeq platform, additional samples

Taxonomy:
synthetic construct
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of Pittsburgh
Accession:
PRJNA1123717
ID:
1123717
17.

​​​​In vivo interaction screening reveals liver-derived constraints to metastasis [Single Cell Multiome ATAC + Gene Expression]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
ETH Zurich
Accession:
PRJNA1113988
ID:
1113988
18.

​​​​In vivo interaction screening reveals liver-derived constraints to metastasis [scRNA-Seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
ETH Zurich
Accession:
PRJNA1113986
ID:
1113986
19.

Erythranthe nasuta cultivar:SF

Mimulus nasutus SF Transcriptome - SF_B2

Taxonomy:
Erythranthe nasuta
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1112005
ID:
1112005
20.

Erythranthe guttata cultivar:IM62

Mimulus guttatus IM62 Improved Transcriptome - IM62_B2

Organism:
Erythranthe guttata
Taxonomy:
Erythranthe guttata (spotted monkey flower)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
DOE Joint Genome Institute
Accession:
PRJNA1111992
ID:
1111992

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