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1.

Mast cell heterogeneity in human nasal polyps

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brigham and Women's Hospital
Accession:
PRJNA1171812
ID:
1171812
2.

Viral triggers of Type 1 diabetes: Effects of Coxsackie B virus infection on transcriptome of trophoblast and pancreatic beta cell lines.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
DiPersio Lab, Department of Molecular & Cellular Physiology, Albany Medical College
Accession:
PRJNA1168578
ID:
1168578
3.

IL-12 drives the expression of the inhibitory receptor NKG2A on human tumor-reactive CD8 T cells

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Other
Scope:
Multiisolate
Earle A. Chiles Research Institute
Accession:
PRJNA1168444
ID:
1168444
4.

High-fidelity PAMless base editing of hematopoietic stem cells to treat chronic granulomatous disease

Project data type: Raw sequence reads
Scope:
Multispecies
Massachusetts General Hospital
Accession:
PRJNA1166861
ID:
1166861
5.

Illumina MiSeq analysis validated the appropriateness of leaf-based culture media as an in situ similis culturomic strategy of plant microbiota

Project data type: Raw sequence reads
Scope:
Multispecies
Cairo University
Accession:
PRJNA1166718
ID:
1166718
6.

Human herpesvirus-6B infection and alterations of gut microbiome in patients with fibromyalgia: a pilot study

Fibromyalgia and gut microbiome

Project data type: Other
Scope:
Monoisolate
Latvian Biomedical Research and Study Centre
Accession:
PRJEB80379
ID:
1166550
7.

Acute IL-6 exposure triggers canonical IL6Ra signaling in hiPSC microglia, but not neural progenitor cells

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Vernon Lab, Basic and Clinical Neuroscience, King's College London
Accession:
PRJNA1166124
ID:
1166124
8.

Transcriptomic profiling of LLC LeptoM vector control, Nr1h2/3 DKO and RXRa/b/g TKO upon stimulation with 1μM 9 cis-retinoic acid (RA) in vitro

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Dr. Adrienne Boire, HOPP, MSKCC
Accession:
PRJNA1162927
ID:
1162927
9.

Adipose-derived mesenchymal stem cells overexpressing thrombomodulin reduce thrombogenic risk and enhance therapeutic efficacy

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Nephrology, Hiroshima University Hospital
Accession:
PRJNA1162821
ID:
1162821
10.

Hepatocyte identity and zonal position determine tumourigenic potential of mutant β-catenin

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Beatson Institute for Cancer Research
Accession:
PRJNA1153391
ID:
1153391
11.

Mus musculus

Smad7-based biologic targeting epidermis and stroma promotes healing of diabetic wounds in mice and pigs

Taxonomy:
Mus musculus (house mouse)
Project data type: Raw sequence reads
Scope:
Monoisolate
University of Colorado Anschutz Medical Campus
Accession:
PRJNA1145558
ID:
1145558
12.

GBS manuscript

Molecular characterization of Group B strep in South Africa

Project data type: Other
Scope:
Monoisolate
Centre for Respiratory Diseases and Meningitis
Accession:
PRJEB78571
ID:
1143345
13.

Restricted sugar and ketogenic diets can both alter energy balance and metabolism, but any resultant decrease in energy intake may be counteracted by compensatory reductions in energy expenditure. In healthy adults, randomization to restriction of free-sugars or overall carbohydrates (ketogenic diet) for 12 weeks reduced fat mass without changes in physical activity or resting metabolic rate, compared to a control diet. Free-sugar restriction had minimal effect on metabolism or gut microbiome other than decreased serum low-density lipoprotein cholesterol concentrations. In contrast, ketogenic diet-induced weight loss decreased glucose tolerance, coinciding with increased PDK4 and reduced AMPK and GLUT4 levels in skeletal muscle. In the first 4 weeks, the ketogenic diet reduced fasting glucose, increased apolipoprotein B, C-reactive protein and postprandial glycerol concentrations. However, despite sustained ketosis, these effects were no longer apparent by week 12, when gut microbial beta diversity was altered, possibly reflective of longer-term ketotic adaptation and/or new energy balance status. These data demonstrate that restricting either free-sugars or overall carbohydrates can reduce energy intake without altering physical activity, but with divergent effects on glucose tolerance, lipoprotein profiles and gut microbial composition.

Ketogenic diet (but not sugar restriction) alters glucose tolerance, lipid metabolism, peripheral tissue phenotype and the gut microbiome: an RCT.

Project data type: Other
Scope:
Monoisolate
University of Bath
Accession:
PRJEB72300
ID:
1143306
14.

Sequences within and upstream of the mouse Ets1 gene drive high level expression in B cells, but are not sufficient for consistent expression in T cells

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Biochemistry, University at Buffalo
Accession:
PRJNA1142032
ID:
1142032
15.

Preventive Treatment with a CD73 Small Molecule Inhibitor Enhances Immune Surveillance in K-Ras Mutant Pancreatic Intraepithelial Neoplasia

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Department of Anesthesiology, The University of Texas Health Science Center at Houston
Accession:
PRJNA1140607
ID:
1140607
16.

Dual Role of Neuroplastin in Pancreatic β Cells: Regulating Insulin Secretion and Promoting Islet Inflammation

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Urano, Medicine, Washington University School of Medicine
Accession:
PRJNA1138636
ID:
1138636
17.

12-Lipoxygenase Inhibition Suppresses Islet Immune and Inflammatory Responses and Delays Autoimmune Diabetes in Human Gene Replacement Mice.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Medicine, University of Chicago
Accession:
PRJNA1137967
ID:
1137967
18.

12-Lipoxygenase Inhibition Suppresses Islet Immune and Inflammatory Responses and Delays Autoimmune Diabetes in Human Gene Replacement Mice

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Medicine, University of Chicago
Accession:
PRJNA1137932
ID:
1137932
19.

IFN-ɣ derived from activated human CD4+ T cells inhibits the replication of SARS-CoV-2 depending on cell-type and viral strains.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
MiCAN Technologies Inc.
Accession:
PRJNA1134246
ID:
1134246
20.

WGBS of medial frontal cortices of P28 offspring from breeding of Dnmt3l conditional knockin and Emx1-cre mice

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Lu, Human Anatomy, China Medical University
Accession:
PRJNA1134190
ID:
1134190

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