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Items: 11

1.

Gene expression profile at single cell level of pancreatic islets cells from mice fed with regular or high fat diet for 6 weeks after weaning.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Applied Bioinformatics Core, Physiology & Biophysics, Weill Cornell Medicine
Accession:
PRJNA838852
ID:
838852
2.

HIV-1 J-Lat 10.6 Nanopore MinION R9.4.1 and R10.3 sequencing

Project data type: Raw sequence reads
Scope:
Multispecies
Drexel University
Accession:
PRJNA812612
ID:
812612
3.

Exome capture sequencing of 403 barley accessions for the analysis of copy number variants

We exome captured and sequenced 397 diverse barley accessions to carry out a genome-wide analysis copy number variants affecting coding sequences. The Roche Nimblegen exome capture array was used to enrich for exon sequences (http://sequencing.roche.com/products/nimblegen-seqcap-target-enrichment/seqcap-ez-system/seqcap-ez-designs.html). The enriched samples were then sequenced using an Illumina HiSeq 2000 sequencer. An average of 2 x 24.6 million paired end Illumina reads per sample were generated, which correspond to approximately 80x coverage of the 61.3 Mbp exome capture space.

Project data type: Other
Scope:
Monoisolate
CREA-GB
Accession:
PRJEB33527
ID:
629163
4.

Histone demethylase KDM6A promotes somatic cell reprogramming by epigenetically regulate PTEN and IL-6 signal pathway [RNA-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of histology and embryology, Harbin Medical University
Accession:
PRJNA577418
ID:
577418
5.

An integrated metagenome catalog reveals new insights into the murine gut microbiome

The integrated mouse gut metagenome catalog (iMGMC), comprising 4.6 million unique genes and 660 high-quality metagenome-assembled genomes (MAGs)  linked to reconstructed full-length 16S rRNA gene sequences

Project data type: Genome sequencing and assembly
Scope:
Monoisolate
HELMHOLTZ CENTRE FOR INFECTION RESEARCH
Accession:
PRJEB32890
ID:
548304
6.

Mus musculus strain:C57BL/6

Mus musculus strain:C57BL/6 Raw sequence reads

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Raw sequence reads
Scope:
Monoisolate
Xiamen university
Accession:
PRJNA416443
ID:
416443
7.

Mus musculus strain:C57BL/6

Mus musculus strain:C57BL/6 Raw sequence reads

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Raw sequence reads
Scope:
Monoisolate
Xiamen university
Accession:
PRJNA415257
ID:
415257
8.

Homo sapiens

Gene expression in DCIS.COM and SUM225 MIND xenografts during transition from 2 to 6 to 10 weeks

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Fariba Behbod, Pathology and Laboratory Medicine, University of Kansas Medical Center
Accession:
PRJNA275313
ID:
275313
9.

Refseq Prokaryotic Genome Annotation Project

Project data type: RefSeq Other
Scope:
Multispecies
NCBI
Accession:
PRJNA224116
ID:
224116
10.

Saccharomyces cerevisiae

Chromosomal association of the Smc5/6 complex reveals that it functions in differently regulated pathways

Taxonomy:
Saccharomyces cerevisiae (brewer's yeast)
Project data type: Epigenomics
Scope:
Multiisolate
Laboratory of Genome Structure and Function, Research Center for Epigenetic Disease, The University of Tokyo
Accession:
PRJNA95715
ID:
95715
11.

Enterococcus faecalis EnGen0250 strain:Com 6

Enterococcus faecalis EnGen0250 strain:Com 6 Genome sequencing and assembly

Taxonomy:
Enterococcus faecalis EnGen0250
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Broad Institute
Accession:
PRJNA88895
ID:
88895

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