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Organizing biological data

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Items: 19

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Select item 11462851.

RNA-Seq data from NRC2/3/4 KO N. benthamiana expressing activated NLRs

RNA-Seq data from NRC2/3/4 KO N. benthamiana expressing activated NLRs without cell death due to absence of helper NLRs

: Project data type: Other

Scope:: Monoisolate

The John Innes Centre

Accession:: PRJEB47080
ID:: 1146285

Select item 11251932.

Escherichia coli strain:ST-27C 3/4

Escherichia coli strain:ST-27C 3/4 Genome sequencing

Taxonomy:: Escherichia coli

: Project data type: Genome sequencing

Scope:: Monoisolate

University of Parma

Accession:: PRJNA1125193
ID:: 1125193

Select item 10393083.

RNA-seq data for APOE2/3/4 treatment on HMC3

: Project data type: Raw sequence reads

Scope:: Multispecies

westlake university

Accession:: PRJNA1039308
ID:: 1039308

Select item 10226904.

Draft genome sequence of Pseudomonas sp. V3/3/4/13

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

Center for Biotechnology, Bielefeld University

Accession:: PRJEB61227
ID:: 1022690

Select item 9956125.

Arabidopsis thaliana

Arabidopsis thaliana Raw RNA-sequence reads for cax1/2/3/4 mutants projects

Taxonomy:: Arabidopsis thaliana (thale cress)

: Project data type: Raw sequence reads

Scope:: Multiisolate

Baylor College of Medicine

Accession:: PRJNA995612
ID:: 995612

Select item 9419666.

Small RNA-mediated genetic switches coordinate ALG-3/4 small RNA pathway function

Taxonomy:: Caenorhabditis elegans

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Department of Biology, University of Texas at Arlington

Accession:: PRJNA941966
ID:: 941966

Select item 9413027.

Effect of knockdown of Musashi-1 in Group 3/4 medulloblastomas cells

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Pediatrics, Ribeirao Preto Medicine School - University of Sao Paulo

Accession:: PRJNA941302
ID:: 941302

Select item 9308898.

RNA sequencing of resident human colonic gd T cells bearing the Vg2/3/4 receptor stimulated with butyrophilin-like (BTNL) 3 and BTNL8

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Bioinformatics & Biostatistics, The Francis Crick Institute

Accession:: PRJNA930889
ID:: 930889

Select item 9269419.

S-adenosylmethionine synthases specify distinct H3K3me3 populations and gene expression patterns during heat stress [RNA-seq: sams-4 RNAi, Heat shock]

Taxonomy:: Caenorhabditis elegans

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Amy Walker, Program in Molecular Medicine, UMass Chan Medical School

Accession:: PRJNA926941
ID:: 926941

Select item 90200710.

RNA sequencing of ex vivo human colonic mucosal Vg2/3/4+ CD103+ and CD103negative T cells

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Bioinformatics & Biostatistics, The Francis Crick Institute

Accession:: PRJNA902007
ID:: 902007

Select item 76502411.

Macrophages from Rosa26-integrated Cas9-expressing C57BL/6 mice have a putative TRIF-mediated defect in the TLR-3/4 signaling

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Broad Institute

Accession:: PRJNA765024
ID:: 765024

Select item 76148812.

Next-Generation Sequencing Facilitates Quantitative Analysis of WT, Ring1a-/-, Ring1b-/-, Ring1a/b-/-, Pcgf1/3/5/6-/- and Pcgf1/2/3/4/5/6-/- Embryonic Stem Cells Transcriptomes

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Nanjing University

Accession:: PRJNA761488
ID:: 761488

Select item 68881313.

ITS primers 3/4 amplicon sequencing of 80 samples extracted from soils at the Eden Project

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Exeter

Accession:: PRJNA688813
ID:: 688813

Select item 52146314.

Genome-wide maps of Tle3 binding and Tle1/3/4 deficiency on hematopoietic stem cells

: Umbrella project

Xidian University

Accession:: PRJNA521463
ID:: 521463

Select item 45092115.

Activating Transcription Factor 4 modulated TGFb-induced aggresiveness in triple negative breast cancer vis SMAD2/3/4 and mTORC2 signaling

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Department of Physiology and Biophysics, Weill Cornell Medical College

Accession:: PRJNA450921
ID:: 450921

Select item 34585416.

Oryza sativa cultivar:Kitaake FN185-2/3/4

Oryza sativa Kitaake FN185-2/3/4 Resequencing

Organism:: Oryza sativa

Taxonomy:: Oryza sativa (Asian cultivated rice)

: Project data type: Genome sequencing

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA345854
ID:: 345854

Select item 33437617.

Oryza sativa strain:ubi-XA21 FN 398-3/4/5 | cultivar:Kitaake ubi-XA21 FN 398-3/4/5

Oryza sativa strain:ubi-XA21 FN 398-3/4/5 | cultivar:Kitaake ubi-XA21 FN 398-3/4/5 Genome sequencing

Organism:: Oryza sativa

Taxonomy:: Oryza sativa (Asian cultivated rice)

: Project data type: Genome sequencing

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA334376
ID:: 334376

Select item 17272818.

Mus musculus

Stemness-related factor Sall4 interacts with transcription factors Oct-3/4 and Sox2 and occupies Oct-Sox elements in mouse embryonic stem cells

Taxonomy:: Mus musculus (house mouse)

: Project data type: Epigenomics

Scope:: Multiisolate

Lab. of Prof. Fuyuki Ishikawa, Graduate School of Biostudies, Kyoto University

Accession:: PRJNA172728
ID:: 172728

Select item 12380319.

Caenorhabditis elegans

Gene expression profile of alg-3(tm1155);alg-4(ok1041) animals compared to wild type

Taxonomy:: Caenorhabditis elegans

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Mello, Program in Molecular Medicine, University of Massachusetts Medical School

Accession:: PRJNA123803
ID:: 123803

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