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Organizing biological data

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The following term was not found in BioProject: because<77.>trade.

Select item 9381281.

Direct enzymatic sequencing of 5-methylcytosine at single-base resolution [4]

: Project data type: Epigenomics

Scope:: Multispecies

Rahul M. Kohli, Department of Medicine, University of Pennsylvania

Accession:: PRJNA938128
ID:: 938128

Select item 8430852.

RNA-Seq analysis to study the transcriptomic profiles of mice after 4-month wheel running exercise

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

State Key Laboratory for Conservation and Utilization of Bio-resources in Yunnan, Yunnan University

Accession:: PRJNA843085
ID:: 843085

Select item 7762153.

GapN deletion improves clostridial solvent yield

Deletion of glyceraldehyde-3-phosphate dehydrogenase (gapN) in Clostridium saccharoperbutylacetonicum N1-4(HMT) using CLEAVE™ increases the ATP pool and accelerates solvent production

: Project data type: Other

Scope:: Monoisolate

University of Salford

Accession:: PRJEB45403
ID:: 776215

Select item 7182674.

Global Histone H3 lysine 4 trimethylation (H3K4me3) landscape changes in response to TGF-β1

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Biological and Life Sciences, Ahmedabad University

Accession:: PRJNA718267
ID:: 718267

Select item 7138275.

Expression data from hiPSC derived WT and ISG15 KO endothelial cells stimulated with interferon-a and treated with itaconic acid, dimethyl itaconate, 4-octyl itaconate and ruxolitinib

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

BIOM, Twincore

Accession:: PRJNA713827
ID:: 713827

Select item 6614506.

NAIL: an evolutionarily conserved lncRNA essential for coordinating p38 activation and NFκB mediated chromatin remodelling in inflammation_4

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Institute of Molecular and Cell Biology

Accession:: PRJNA661450
ID:: 661450

Select item 6597107.

Targeting the histone demethylase LSD1 prevents cardiomyopathy in a mouse model of laminopathy

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

physiopathology of cardiac development, University aix marseille, INSERM

Accession:: PRJNA659710
ID:: 659710

Select item 6469048.

Expression data from of FACS separated acinar and duct cell at day 4 of suspension cultured human pancreatic exocrine cells

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Cell Differentiation Laboratory, Vrije Universiteit Brussel

Accession:: PRJNA646904
ID:: 646904

Select item 6279059.

Genetic ablation of either G6P-isomerase or dual LDHA/B in colon cancer cells LS174T , +/- MPP+ (1-methyl-4-phenylpyridinium)

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Molecular Genetics Core Facility :241 Fred Humphries Science Research Building, College of Pharmacy & Pharmaceutical Science, Florida Agricultural & Mechanical University

Accession:: PRJNA627905
ID:: 627905

Select item 57992310.

Transcriptome analysis of N1E115 cells cultured in the presence of 20% or 4% O2

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Mayo Clinic

Accession:: PRJNA579923
ID:: 579923

Select item 53286811.

RNAseq of healthy and Francisella noatunensis infected Atlantic cod juveniles

RNAseq of 48 Atlantic cod juveniles. Time-series of a Francisella noatunensis infection with parallell controls 6hrs, 2, 4 and 7 days post intraperitonal injection

: Project data type: Other

Scope:: Monoisolate

UNIVERSITY OF OSLO

Accession:: PRJEB31396
ID:: 532868

Select item 51092512.

Interleukin-4 induces neural stem cell plasticity by antagonizing Serotonin/HTR1 signaling that suppresses BDNF/NGFRA in adult zebrafish Alzheimer's disease model

Organism:: Danio rerio

Taxonomy:: Danio rerio (zebrafish)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

AG KIZIL, German Center for Neurodegenerative Diseases (DZNE) Dresden, Helmholtz Association

Accession:: PRJNA510925
ID:: 510925

Select item 49710913.

Context dependent Histone H3 Lysine 4 methylation is necessary for repression and is a requisite modification for facultative heterochromatin at distinct loci [RNA-seq]

Taxonomy:: Neurospora crassa

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Belden Lab, Animal Sciences, Rutgers, The State University of New Jersey

Accession:: PRJNA497109
ID:: 497109

Select item 49709314.

Context dependent Histone H3 Lysine 4 methylation is necessary for repression and is a requisite modification for facultative heterochromatin at distinct loci [ChIP-seq]

Taxonomy:: Neurospora crassa

: Project data type: Epigenomics

Scope:: Multiisolate

Belden Lab, Animal Sciences, Rutgers, The State University of New Jersey

Accession:: PRJNA497093
ID:: 497093

Select item 39265215.

Histone H3K9me3 ChIP-seq of young adult C. elegans wildtype, and mutants emb-4 (qm31) and hrde-1 (tm1200)

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB20485
ID:: 392652

Select item 38508616.

Homo sapiens

MMSET I acts as an oncoprotein and regulates GLO1 expression in t(4;14) multiple myeloma cells

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

CSI Singapore, National University of Singapore

Accession:: PRJNA385086
ID:: 385086

Select item 38010317.

Homo sapiens

The Psychiatric Risk Gene Transcription Factor 4 (TCF4) Regulates Neurodevelopmental Pathways Associated With Schizophrenia, Autism, and Intellectual Disability