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Items: 1 to 20 of 52

  • The following term was not found in BioProject: comLambdaPhi.
1.
2.

scRNA-seq analysis of ATII's responses to IL-4 cytokines during aging

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
OMNI Bx, Genentech
Accession:
PRJNA1135138
ID:
1135138
3.

Inhibition of aberrantly overexpressed Polo-like kinase 4 is a potential effective treatment for DNA damage repair-deficient uterine leiomyosarcoma

Polo-like kinase 4 inhibition in uterine leiomyosarcoma

Project data type: Other
Scope:
Monoisolate
The University of Hong Kong
Accession:
PRJEB75545
ID:
1115034
4.

Epigenetic recording of stimulation history reveals BLIMP1-BACH2 balance in determining memory B cell fate upon recall challenge (ATAC-Seq 4)

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Tsinghua University
Accession:
PRJNA1111879
ID:
1111879
5.

4 cell lines depleted of key NMD-factors (SMG5, SMG6 and SMG7)

Project data type: Raw sequence reads
Scope:
Multispecies
University Hospital Heidelberg
Accession:
PRJNA1054031
ID:
1054031
6.

SEX-DEPENDENT APOE4 NEUTROPHIL-MICROGLIA INTERACTIONS DRIVE COGNITIVE IMPAIRMENT IN ALZHEIMER'S DISEASE [Mouse_Neutro_Spleen_APOE3_4]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brigham and Women's Hospital, Harvard Medical School
Accession:
PRJNA1019751
ID:
1019751
7.

SEX-DEPENDENT APOE4 NEUTROPHIL-MICROGLIA INTERACTIONS DRIVE COGNITIVE IMPAIRMENT IN ALZHEIMER'S DISEASE [Mouse_Microglia_APOE3_4]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Brigham and Women's Hospital, Harvard Medical School
Accession:
PRJNA1019748
ID:
1019748
8.

IL-33/IL-4/TGF-beta induced DC9 transcriptome sequencing analysis

Project data type: Raw sequence reads
Scope:
Multispecies
Institute of Zoology, Chinese Academy of Sciences
Accession:
PRJNA935063
ID:
935063
9.

Anti-NR2F1 scCUT&Tag on FAC-sorted Isl1MN-GFP rhombomere 4 neurons from wildtype and HCFP1 Fam5snv/snv E10.5 mouse embryos

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Boston Childrens Hospital
Accession:
PRJNA925500
ID:
925500
10.

Immunotherapy resistance in melanoma

Clinical and Molecular Heterogeneity in Patients with Innate Resistance to Anti-PD-1 and/or Anti-CTLA-4 Immunotherapy in Metastatic Melanoma Reveals Distinct Therapeutic Targets

Project data type: Other
Scope:
Monoisolate
Melanoma Institute Australia
Accession:
PRJEB45846
ID:
840154
11.

Alcohol induced increases in sperm Histone H3 lysine 4 trimethylation correlate with increased placental CTCF occupancy and altered developmental programming

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
Golding Lab, Physiology, Texas A&M UNiversity
Accession:
PRJNA838979
ID:
838979
12.

Pancreatic cancer cells upregulation of LPA receptor 4 in response to stress create a tumor-initiating niche

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of California San Diego
Accession:
PRJNA813316
ID:
813316
13.

Dissecting iNKT cell selection and subset differentiation in real-time

To systematically investigate the earliest phases of iNKT cell development and subsequent subset differentiation, we generated a genetic system to induce a timed wave of iNKT cell generation upon 4-hydroxytamoxifen (4-OHT) administration in mice bearing CD4-CreERt2 (Sledzinska et al., 2013) and Vα14iStopF (Vahl et al., 2013) knock-in transgenes. We globally investigated the transcriptional changes that guide early iNKT cell development by bulk 3’-sequencing of poly(A)-RNA of induced developing iNKT cells between 12h and 5d after induction in comparison to DP thymocytes, stage 0 CD24+ iNKT cells as well as NKT1, NKT2 and NKT17 mature subsets. Briefly, CD4-CreERt2 Vα14iStopF (± Traj18KO) mice were administered with 4-OHT and sacrificed at different timepoints after administration (between 12h and 120h). 1000 cells of the following samples were FACS purified for RNA-seq analyses: 9 timepoints of induced iNKT cells (from 12h to 120h) (gated as mCD1d-PBS57- Tetramer+ CD44low NK1.1−); DP = DP thymocytes (TCRβ− mCD1d-PBS57-Tetramer− CD4+ CD8+ CD69−); CD24+ = early wildtype iNKT cells (mCD1d-PBS57-Tetramer+ CD44− CD24+); NKT1 (mCD1d-PBS57-Tetramer+ CD44+ NK1.1+ CD27+ CD138−); NKT2 (mCD1d- PBS57-Tetramer+, NK1.1− PLZFeGFP+ ICOS+ IL17RB+ CD138−); NKT17 (mCD1d- PBS57-Tetramer+ CD19− ICOS+ CD138+). For each condition, four biological replicates were sequenced (except for 96h timepoint, where two samples of the same mouse where sequenced). For the NKT17 samples and two NKT2 samples, 2 mice were pooled. For CD24+ samples, 4-6 mice were pooled. Library preparation for bulk 3’-sequencing of poly(A)-RNA was done as described previously (Parekh et al., 2016). The library was sequenced on a NextSeq 500 (Illumina) with 16 cycles for the barcodes and UMIs and 50 cycles for the cDNA.

Project data type: Other
Scope:
Monoisolate
Klinikum rechts der Isar, II. Medizinische Klinik
Accession:
PRJEB46388
ID:
763452
14.
15.

PCB126 (3,3',4,4',5-Pentachlorobiphenyl) induced alterations in m6A RNA modifications in zebrafish embryos

Organism:
Danio rerio
Taxonomy:
Danio rerio (zebrafish)
Project data type: Other
Scope:
Multiisolate
Aluru Lab, Biology, Woods Hole Oceanographic Institution
Accession:
PRJNA642647
ID:
642647
16.

Fc receptor-like 4 (FCLR4) and Fc receptor-like receptor 5 (FCRL5) define and control human atypical memory B cells [RNA-Seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Other
Scope:
Multiisolate
LIB, Tolnay lab, CDER, OPQ, OBP, Division IV, FDA
Accession:
PRJNA607491
ID:
607491
17.

Anaerobic 1,4-dioxane biodegradation and microbial community analysis in microcosms using various electron acceptorss

Project data type: Raw sequence reads
Scope:
Multispecies
Michigan State University
Accession:
PRJNA590578
ID:
590578
18.

A375 BRAF/MEK/Dual exome seq

This study contains 4 exomes of A375, parental, BRAF resistant population, MEK resistant population and a BRAF/MEK resistant population

Project data type: Other
Scope:
Monoisolate
GENENTECH
Accession:
PRJEB34013
ID:
561747
19.

Epigenetic priming by Dppa2/4 in pluripotency facilitates multi-lineage commitment

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Bioinformatics, Babraham Institute
Accession:
PRJNA560249
ID:
560249
20.

Bach2 deficiency leads to spontaneous expansion of IL-4-producing T follicular helper cells and autoimmunity

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Shanghai Jiao Tong University School of Medicine
Accession:
PRJNA557414
ID:
557414

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