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Items: 1 to 20 of 532

1.

PIPseq T20 v3.0 versus 10x Genomics Chromium Next GEM Single Cell 3' Kit v3.1 Dual Index

Project data type: Raw sequence reads
Scope:
Multispecies
Fryer
Accession:
PRJNA1170298
ID:
1170298

2.

YAP-Driven Malignant Reprogramming of Oral Epithelial Stem Cells, 3' single cell RNA sequencing

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Moores Cancer Center, UC San Diego Health
Accession:
PRJNA1158848
ID:
1158848

3.

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Efficient custom tailing of 3' end of RNA with modified adenosine for direct nanopore total RNA sequencing

Project data type: Other
Scope:
Monoisolate
michigan technological university cfres
Accession:
PRJEB63690
ID:
1152432

4.

5' RACE (Rapid amplification of cDNA ends) and 3' RACE of U6 or U1-driven Cas13 CRISPR RNAs (crRNAs)

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
School of Biomedical Sciences, The University of Hong Kong
Accession:
PRJNA1150101
ID:
1150101

5.

The competition between splicing and 3′ processing shapes the human transcriptome

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Other
Scope:
Multiisolate
Shi, Microbiology & Molecular Genetics, UC Irvine
Accession:
PRJNA1149699
ID:
1149699

6.

Developmental regulation of endothelial-to-hematopoietic transition from iPSCs [10X 3' sc-RNA-seq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Sergei Doulatov, University of Washington
Accession:
PRJNA1144919
ID:
1144919

7.

Optimizing Cost-Effective Gene Expression Phenotyping Approaches in Cattle Using 3′ mRNA Sequencing

Organism:
Bos taurus
Taxonomy:
Bos taurus (domestic cattle)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Troy Rowan's Lab, Animal Science Department, University of Tennessee
Accession:
PRJNA1137403
ID:
1137403

8.

3' RNAseq of POLYPOMICS patients

Project data type: Raw sequence reads
Scope:
Multispecies
Lille University
Accession:
PRJNA1136663
ID:
1136663

9.

Location of polyadenylation sites within 3’ untranslated regions is linked to biological function in yeast

Organism:
Schizosaccharomyces pombe
Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Other
Scope:
Multiisolate
Struhl lab, BCMP, Harvard Medical School
Accession:
PRJNA1132142
ID:
1132142

10.

DEAD-box ATPase Dbp2 mediates mRNA release after 3’-end formation - II

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB71980
ID:
1130808

11.

DEAD-box ATPase Dbp2 mediates mRNA release after 3’-end formation

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB71979
ID:
1130807

12.

DEAD-box ATPase Dbp2 mediates mRNA release after 3’-end formation - III

Project data type: Other
Scope:
Monoisolate
European Bioinformatics Institute
Accession:
PRJEB71965
ID:
1130806

13.

Downregulation of MED12 via siRNA in SPHEROIDS derived from prostate cancer cell lines (3’ tag DGE)

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck
Accession:
PRJNA1120054
ID:
1120054

14.

Inhibition of CDK8/CDK19 with the small molecule inhibitor SEL120-34A in prostate cancer cell lines (3’ tag DGE)

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck
Accession:
PRJNA1120051
ID:
1120051

15.

Downregulation of MED12 via siRNA in prostate cancer cell lines (3’ tag DGE)

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Institute of Pathology, Neuropathology and Molecular Pathology, Medical University of Innsbruck
Accession:
PRJNA1120050
ID:
1120050

16.

Computational identification of surface markers for isolating distinct subpopulations from heterogeneous cancer cell populations [3’-Tag RNAseq]

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
The University of Texas at Austin
Accession:
PRJNA1115791
ID:
1115791

17.

Developmentally regulated alternate 3’ end cleavage of nascent transcripts controls dynamic changes in protein expression in an adult stem cell lineage

Organism:
Drosophila melanogaster
Taxonomy:
Drosophila melanogaster (fruit fly)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Margaret Fuller, Developmental Biology, Stanford University
Accession:
PRJNA1111015
ID:
1111015

18.

Thr4 phosphorylation on RNA Pol II occurs at early transcription regulating 3’-end processing

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Molecular Biosciences, The University of Texas at Austin
Accession:
PRJNA1093446
ID:
1093446

19.

Thr4 phosphorylation on RNA Pol II occurs at early transcription regulating 3’-end processing

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
University of Texas-Austin
Accession:
PRJNA1093031
ID:
1093031

20.

U4 inhibits premature cleavage and polyadenylation of pre-mRNAs [mRNA 3'-seq]

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
school of medicine, sysu
Accession:
PRJNA1091628
ID:
1091628

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