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Items: 16

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1.

Effects of application of (Z)-3-Hexenol on Solanum lycopersicum

Project data type: Raw sequence reads
Scope:
Multispecies
Universidad Politecnica de Valencia
Accession:
PRJNA1009051
ID:
1009051
2.

Patiria miniata

Differential gene expression RNAseq of FGFR perturbed 3 day old Patiria miniata larvae

Taxonomy:
Patiria miniata (bat star)
Project data type: Raw sequence reads
Scope:
Multiisolate
Brown University
Accession:
PRJNA898435
ID:
898435
3.

HIV-1 J-Lat 10.6 Nanopore MinION R9.4.1 and R10.3 sequencing

Project data type: Raw sequence reads
Scope:
Multispecies
Drexel University
Accession:
PRJNA812612
ID:
812612
4.

Transcriptome analisys of scl28-3

Organism:
Arabidopsis thaliana
Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
IBR
Accession:
PRJNA755613
ID:
755613
5.

Effect of in utero nicotine exposure and elastase instillation on transcriptomic profile at post-elastase day 3 in mice

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Department of Pathology and Immunology, University of Geneva Medical School
Accession:
PRJNA704969
ID:
704969
6.

Methylome of galls formed by Meloidogyne javanica in Arabidopsis thaliana at 3 days post infection

Organism:
Arabidopsis thaliana
Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Epigenomics
Scope:
Multiisolate
University of Castilla-La Mancha
Accession:
PRJNA655833
ID:
655833
7.

1000 Genomes Project phase 3: 30X coverage whole genome sequencing of 698 samples to complete trios

30X whole genome sequencing coverage of 698 samples to complete trios in Phase 3 1000 Genome sample set

Project data type: Other
Scope:
Monoisolate
NYGC
Accession:
PRJEB36890
ID:
629214
8.

Exome capture sequencing of 403 barley accessions for the analysis of copy number variants

We exome captured and sequenced 397 diverse barley accessions to carry out a genome-wide analysis copy number variants affecting coding sequences. The Roche Nimblegen exome capture array was used to enrich for exon sequences (http://sequencing.roche.com/products/nimblegen-seqcap-target-enrichment/seqcap-ez-system/seqcap-ez-designs.html). The enriched samples were then sequenced using an Illumina HiSeq 2000 sequencer. An average of 2 x 24.6 million paired end Illumina reads per sample were generated, which correspond to approximately 80x coverage of the 61.3 Mbp exome capture space.

Project data type: Other
Scope:
Monoisolate
CREA-GB
Accession:
PRJEB33527
ID:
629163
9.

Single-cell RNA-seq of mouse embryoid body cells, day 3 to day 7. Includes wild type and Tet TKO.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Bioinformatics, The Babraham Institute
Accession:
PRJNA552269
ID:
552269
10.

Single-cell methylation and accessibility of mouse embryoid body cells, day 3 to day 7. Includes wild type and Tet TKO.

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Other
Scope:
Multiisolate
Bioinformatics, The Babraham Institute
Accession:
PRJNA552263
ID:
552263
11.

Freshwater monitoring by nanopore sequencing (Albacore v2.3.1 base calls)

Project data type: Other
Scope:
Monoisolate
EMBL EBI
Accession:
PRJEB32906
ID:
547937
12.

1000 Genomes Project phase 3: 30X coverage whole genome sequencing

30X whole genome sequencing coverage of the 2504 Phase 3 1000 Genome samples.

Project data type: Other
Scope:
Monoisolate
NYGC
Accession:
PRJEB31736
ID:
527456
13.

Mus musculus

Single-cell RNA-seq of 1.3 million brain cells from E18 mice

Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
10X Genomics Inc
Accession:
PRJNA360949
ID:
360949
14.

Homo sapiens

NCIC CTG MA.22 phase I/II trial of epirubicin and docetaxel in locally advanced breast cancer on 2-weekly or 3-weekly schedules

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Tumor Biology, Advanced Medical Research Institute of Canada
Accession:
PRJNA278663
ID:
278663
15.

Homo sapiens

Transcriptional patterns associated with OvCar-3 cells in response to osteopontin-c splicing isoform overexpression

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Instituto Nacional de Câncer
Accession:
PRJNA248351
ID:
248351
16.

Homo sapiens

Transcriptional patterns associated with PC-3 cells in response to osteopontin-c splicing isoform overexpression

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Instituto Nacional de Câncer
Accession:
PRJNA248350
ID:
248350

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