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Items: 1 to 20 of 21

1.

DNA methylation of peripheral blood genomics in patients with systemic lupus erythematosus and Sjogren's syndrome

Project data type: Raw sequence reads
Scope:
Multispecies
Zhejiang Chinese Medical University
Accession:
PRJNA907186
ID:
907186
2.

Transcriptome-wide analysis of U2AF2 RNA binding in a human hematopoietic cell line.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Halene Lab, Internal Medicine - Yale Cancer Center, Yale University
Accession:
PRJNA801682
ID:
801682
3.

Multi-omics analysis of RNA binding, splicing and turnover alterations induced by mutant U2AF1 in myeloid malignancies.

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Halene Lab, Internal Medicine - Yale Cancer Center, Yale University
Accession:
PRJNA801503
ID:
801503
4.

Transcriptomic Characterization of PRP5 knockdown in HEK293T cells

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Westlake University
Accession:
PRJNA770616
ID:
770616
5.

Co-transcriptional splicing regulates 3' end cleavage during mammalian erythropoiesis

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biophysics & Biochemistry, Yale University
Accession:
PRJNA603057
ID:
603057
6.

The impact of Prp18p on splicing fidelity and efficiency in budding yeast

Organism:
Saccharomyces cerevisiae
Taxonomy:
Saccharomyces cerevisiae (brewer's yeast)
Project data type: Other
Scope:
Multiisolate
Guillaume Chanfreau, Chemistry and Biochemistry, UCLA
Accession:
PRJNA544962
ID:
544962
7.

Mutations in splicing factor SF3B1 promote transformation through MYC stabilization

Project data type: Other
Scope:
Multispecies
The Rabadan Lab, Systems Biology, Columbia university
Accession:
PRJNA478381
ID:
478381
8.

Determination of branch point (BP) usage by wild-type and mutant SF3B1 using a minigene library

Project data type: Other
Scope:
Multispecies
PILLAI LAB, YALE UNIVERSITY
Accession:
PRJNA475417
ID:
475417
9.

Next Generation RNA Sequencing reveals defects in nuclear mRNA maturation of Arabidopsis thaliana lefko1 mutant

Organism:
Arabidopsis thaliana
Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Other
Scope:
Multiisolate
Molecular Biology, Biotechnology, Agricultural University of Athens
Accession:
PRJNA416920
ID:
416920
10.

Next Generation RNA Sequencing reveals defects in nuclear mRNA maturation of Arabidopsis thaliana lefko2 mutant

Project data type: Raw sequence reads
Scope:
Multispecies
Agricultural University of Athens
Accession:
PRJNA416765
ID:
416765
11.

Schizosaccharomyces pombe

U2AF65Prp2 promotes intron definition by stabilizing U1 snRNP at the 5’ splice site

Taxonomy:
Schizosaccharomyces pombe (fission yeast)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Oxidative Stress and Cell Cycle Group, Universitat Pompeu Fabra
Accession:
PRJNA380951
ID:
380951
12.

Homo sapiens

Novel SF3B1 Deletion Mutations Result in Aberrant RNA Splicing in CLL Patients

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
H3 Biomedicine
Accession:
PRJNA376727
ID:
376727
13.

Homo sapiens

DNA resequencing of CLL patient samples harboring in-frame SF3B1 deletions

Taxonomy:
Homo sapiens (human)
Project data type: Raw sequence reads
Scope:
Multiisolate
H3 Biomedicine
Accession:
PRJNA376606
ID:
376606
14.

Arabidopsis thaliana

Next Generation RNA Sequencing reveals defects in nuclear and chloroplast mRNA maturation of Arabidopsis thaliana lefko2 mutant

Taxonomy:
Arabidopsis thaliana (thale cress)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Molecular Biology, Biotechnology, Agricultural University of Athens
Accession:
PRJNA371493
ID:
371493
15.

Homo sapiens

Homo sapiens Raw sequence reads

Taxonomy:
Homo sapiens (human)
Project data type: Targeted Locus (Loci)
Scope:
Monoisolate
Brown University
Accession:
PRJNA354612
ID:
354612
16.

CANCOLOLORETA

The Role of Candida in the Lower Respiratory Tract of Intubated and Mechanically Ventilated ICU Patients

Project data type: Other
Scope:
Monoisolate
Graz University of Technology
Accession:
PRJEB7613
ID:
324208
17.

In vivo-expressed HIV-1 spliced RNAs

Sequence analysis of in vivo-expressed HIV-1 spliced RNAs reveals the usage of new and unusual splice sites by viruses of different subtypes

Project data type: Other
Scope:
Monoisolate
Centro Nacional de Microbiologia, Instituto de Salud Carlos III
Accession:
PRJEB13105
ID:
318473
18.

Cancer associated SF3B1 hotspot mutations induce cryptic 3' splice site selection through use of a different branch point

Project data type: Transcriptome or Gene expression
Scope:
Multispecies
H3 Biomedicine
Accession:
PRJNA295064
ID:
295064
19.

Homo sapiens

Cancer associated SF3B1 hotspot mutations induce cryptic 3' splice site selection through use of a different branch point

Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
H3 Biomedicine
Accession:
PRJNA294614
ID:
294614
20.

Saccharomyces cerevisiae

Nonsense-Mediated Decay restricts lncRNAs levels in yeast unless blocked by double-stranded RNA structure

Taxonomy:
Saccharomyces cerevisiae (brewer's yeast)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Non-coding RNA, epigenetics and genome fluidity, UMR3244, Institut Curie
Accession:
PRJNA285346
ID:
285346

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