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1.

Fusarium verticillioides MAT1-2 strain near isogenic to the sequenced FGSC7600

Project data type: Raw sequence reads
Scope:
Multispecies
USDA-ARS
Accession:
PRJNA1133776
ID:
1133776
2.

A SARS-CoV-2 ultra-deep sequencing analysis of the mutant spectrum and consensus sequences of nasopharyngeal swabs from patients that became infected in Spain in April 2020

Incipient functional SARS-CoV-2 diversification identified through neural network haplotype maps

Project data type: Other
Scope:
Monoisolate
fundacion instituto de investigacion fundacion jimenez diaz
Accession:
PRJEB70805
ID:
1075589
3.

Pathogenic role of alarmin IL-33 in a mouse model of SARS-CoV-2 infection

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Soong Laboratory, Microbiology and Immunology, University of Texas Medical Branch
Accession:
PRJNA1037182
ID:
1037182
4.

Targeted Amplification and Genetic Sequencing of the Severe Acute Respiratory Syndrome Coronavirus 2 Surface Glycoprotein

Project data type: Raw sequence reads
Scope:
Multispecies
Centers for Disease Control and Prevention
Accession:
PRJNA999712
ID:
999712
5.

QUALCOV2

International external quality assessment for SARS-CoV-2 genome sequencing, variant and cluster identification

Project data type: Other
Scope:
Monoisolate
University Hospital Center and University of Lausanne
Accession:
PRJEB64021
ID:
991410
6.

Saccharomyces cerevisiae strain:IMX2713

Saccharomyces cerevisiae IMX2713 (CEN.PK113-7D deltasga1::cas9-natNT2 deltaX-2::Ercas12a)

Organism:
Saccharomyces cerevisiae
Taxonomy:
Saccharomyces cerevisiae (brewer's yeast)
Project data type: Raw sequence reads
Scope:
Multiisolate
Delft University of Technology
Accession:
PRJNA977855
ID:
977855
7.

A non-transmissible live attenuated SARS-CoV-2 vaccine

Project data type: Raw sequence reads
Scope:
Multispecies
Freie Universitat Berlin
Accession:
PRJNA951657
ID:
951657
8.

Deletion of exons 2 and 3 from Actb leads to widespread, beta-actin independent alterations in gene expression associated with cell cycle control

Project data type: Raw sequence reads
Scope:
Multispecies
University of Central Florida
Accession:
PRJNA932718
ID:
932718
9.

Dasypus novemcinctus isolate:mDasNov1

Dasypus novemcinctus (nine-banded armadillo) genome, mDasNov1, haplotype 2

Organism:
Dasypus novemcinctus
Taxonomy:
Dasypus novemcinctus (nine-banded armadillo)
Project data type: Genome sequencing and assembly
Scope:
Monoisolate
Vertebrate Genomes Project
Accession:
PRJNA923800
ID:
923800
10.

DADA2TWINS

Consistent disease manifestations with a staggered time course in two identical twins affected by adenosine deaminase 2 deficiency

Project data type: Other
Scope:
Monoisolate
San Raffaele Telethon Institute for Gene Therapy
Accession:
PRJEB52333
ID:
918111
11.

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Detection of an IMI-2 Carbapenemase-Producing Enterobacter asburiae at a Feed Processing Plant in Sweden

Project data type: Other
Scope:
Monoisolate
Depertment for Microbial Ecology
Accession:
PRJEB53023
ID:
880095
12.

targeted single-cell RNA sequencing data of residual TIM-3+ leukemic stem cells post-SCT_2

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Monoisolate
Kyushu University
Accession:
PRJNA849810
ID:
849810
13.

Ribosomal RNA 2’-O-methylation dynamics during development and differentiation impact cell fate decisions

Project data type: Other
Scope:
Multispecies
Anders Lund Lab, Biotechnology Research and Innovation Centre (BRIC), University of Copenhagen
Accession:
PRJNA843083
ID:
843083
14.

Global transcriptomic analyses of pluripotent stem cell-derived airway epithelial cells at 1 and 3 days after infection with SARS-CoV-2

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
Center for Regenerative Medicine, Boston University
Accession:
PRJNA805095
ID:
805095
15.

Metataxonomic analysis of milk samples from SARS-CoV-2- positive and SARS-CoV-2-negative women

Project data type: Raw sequence reads
Scope:
Multispecies
Universidad Complutense of Madrid
Accession:
PRJNA795855
ID:
795855
16.

SARS-CoV-2 genomes from upper and lower respiratory tract

Pairs of SARS-CoV-2 genomes from upper and lower respiratory tract of different individuals

Project data type: Genome sequencing
Scope:
Monoisolate
Friedrich-Loeffler-Institut
Accession:
PRJEB42830
ID:
783254
17.

Bruton’s tyrosine kinase (BTK) and indoleamine 2,3-dioxygenase (IDO) block differentiation of inflammatory dendritic cells in tumors [Bulk RNA-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Transcriptome or Gene expression
Scope:
Multiisolate
2125 K, Georgia Cancer Center, Augusta University
Accession:
PRJNA746314
ID:
746314
18.

Bruton’s tyrosine kinase (BTK) and indoleamine 2,3-dioxygenase (IDO) block differentiation of inflammatory dendritic cells in tumors [ATAC-seq]

Organism:
Mus musculus
Taxonomy:
Mus musculus (house mouse)
Project data type: Epigenomics
Scope:
Multiisolate
2125 K, Georgia Cancer Center, Augusta University
Accession:
PRJNA746298
ID:
746298
19.

SARS-CoV-2 Pakistan in April 2021

SARS-CoV-2 variants of concern dominate in Lahore, Pakistan in April 2021

Project data type: Other
Scope:
Monoisolate
Quadram Institute Bioscience
Accession:
PRJEB45462
ID:
736011
20.

Characterization of the immune response in patients with cancer of the oral cavity after neoadjuvant immunotherapy with the IRX-2 regimen

Organism:
Homo sapiens
Taxonomy:
Homo sapiens (human)
Project data type: Epigenomics
Scope:
Multiisolate
Sartor, Bioinformatics, University of Michigan
Accession:
PRJNA727300
ID:
727300

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