See
Genome Information for Prunus avium
With the aim to study the effects of the domestication at a genome-wide scale in cherry, we set out to reconstruct the genome sequence of a modern cherry variety ( BigStar*) and to analyze the genetic variation in samples exposed to different rates of selective pressure, such as wild cherry trees, landraces and the more recent modern varieties.
| Accession | PRJNA419491 |
| Data Type | Genome sequencing and assembly |
| Scope | Multiisolate |
| Organism | Prunus avium[Taxonomy ID: 42229] Eukaryota; Viridiplantae; Streptophyta; Embryophyta; Tracheophyta; Spermatophyta; Magnoliopsida; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Rosales; Rosaceae; Amygdaloideae; Amygdaleae; Prunus; Prunus avium |
| Publications | Pinosio S et al., "A draft genome of sweet cherry (Prunus avium L.) reveals genome-wide and local effects of domestication.", Plant J, 2020 Aug;103(4):1420-1432 |
| Grants | - "Conoscenze Integrate per sostenibilità e innovazione del MADE IN ITALY Agroalimentare (CISIA)" (Grant ID B51J10001290001, Ministero dell'economia e finanza)
- "Novel variation in plant breeding and the plant pan-genomes" (Grant ID 294780, European Research Council)
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| Submission | Registration date: 15-Jul-2020
Universita' degli Studi di Udine |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| Nucleotide (total) | 3754 |
| WGS master | 1 |
| SRA Experiments | 106 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 103 |
| Assembly | 1 |