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Organizing biological data

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The following term was not found in BioProject: eggc.viprIM.

Select item 9179601.

RNAseq of camta3/dsc1/dsc2 after elf18 or mock treatment, against wt control, at 10, 30 and 90 minutes

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB43643
ID:: 917960

Select item 9142582.

Transcriptomics study on HepG2 cells treated with 0.001 μM 2,4-D for 0, 10, 30, 360 min

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Post-translational modification, Post-translational modification, Beijing Proteome Research Center

Accession:: PRJNA914258
ID:: 914258

Select item 8296813.

Panicum virgatum cultivar:FLAME 1041-30-4-10 Pv

Panicum virgatum FLAME 1041-30-4-10 Pv Resequencing genome sequencing

Organism:: Panicum virgatum

Taxonomy:: Panicum virgatum (switchgrass)

: Project data type: Genome sequencing

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA829681
ID:: 829681

Select item 8296624.

Panicum virgatum cultivar:FLAME 1040-30-1-10 Pv

Panicum virgatum FLAME 1040-30-1-10 Pv Resequencing genome sequencing

Organism:: Panicum virgatum

Taxonomy:: Panicum virgatum (switchgrass)

: Project data type: Genome sequencing

Scope:: Monoisolate

DOE Joint Genome Institute

Accession:: PRJNA829662
ID:: 829662

Select item 8015555.

Analysis of human healthy enteroids and colonoids (3D organoid models from small intestine and colon) exposed to chemotherapy agent Doxorubicin (DOX) sampled at four doses (1,10, 30 and 60uM) and three time points (24, 48 and 72h).

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB49985
ID:: 801555

Select item 8002756.

RNA-Seq analysis of wild type Pseudomonas aeruginosa adhered to a surface for 5, 10, 15, 30, 45, or 60min

Taxonomy:: Pseudomonas aeruginosa PAO1

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Wozniak, Microbial Infection and Immunity, The Ohio State Univerisity

Accession:: PRJNA800275
ID:: 800275

Select item 6696447.

food fermentation metagenome

ITS sequencing for fungal community of fermented grains at day 0, 5, 10, 15, 20 and 30

Taxonomy:: food fermentation metagenome

: Project data type: Targeted Locus (Loci)

Scope:: Other

School of Biotechnology, State Key Laboratory of Food Science and Technology

Accession:: PRJDB7541
ID:: 669644

Select item 6696408.

food fermentation metagenome

Amplicon sequencing of the fermented grains at day 0, 5, 10, 15, 20 and 30

Taxonomy:: food fermentation metagenome

: Project data type: Targeted Locus (Loci)

Scope:: Other

School of Biotechnology, State Key Laboratory of Food Science and Technology

Accession:: PRJDB7535
ID:: 669640

Select item 6572219.

ESBL-producing E. coli from Children and Domestic Animals in Ecuador

Environmental Spread of Extended Spectrum Beta-lactamase (ESBL) Producing E. coli and ESBL Genes Among Children and Domestic Animals in Ecuador

: Project data type: Genome sequencing and assembly

Scope:: Monoisolate

Universidad San Francisco de Quito (USFQ)

Accession:: PRJEB37285
ID:: 657221

Select item 59979310.

Microbial imbalance in inflammatory bowel disease patients at different taxonomic levels

We have performed 16S sequencing experiment on faecal samples obtained from 30 individuals (9 Crohn's disease patients, 11 ulcerative colitis (UC) patients and 10 healthy volunteers). In this study, we examined the imbalance in the gut microbiota in IBD patients compared to healthy volunteers. We find that the gut microbiota of IBD patients is less biodiverse than healthy individuals. Also, the changes are mainly in 4 most abundant phyla including Firmicutes, Bacteroidetes, Actinobacteria and Proteobacteria.