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Organizing biological data

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The following terms were not found in BioProject: asymptotically, toqqtest21, withcontour, anti-clockwise.

Select item 11854911.

Petrosaviidae

Identification of toxic plants from poisonous samples using massively parallel sequencing

Taxonomy:: Petrosaviidae

: Project data type: Targeted Locus (Loci)

Scope:: Multispecies

National Research Institute of Police Science

Accession:: PRJDB19131
ID:: 1185491

Select item 11754462.

Integrated transcriptomic and experimental verification reveals Danlong Dingchuan Decoction inhibiting IL-17 pathway to alleviate asthma inflammation

: Project data type: Raw sequence reads

Scope:: Multispecies

chongqing university of Chinese medicine

Accession:: PRJNA1175446
ID:: 1175446

Select item 11696153.

Lack of TYK2 Signaling Enhances Host Resistance to Candida albicans Skin Infection

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Veterinary University Vienna

Accession:: PRJNA1169615
ID:: 1169615

Select item 11514854.

Identifying crossover locations from pollen of Arabidopsis thaliana Col x Ler F1 plants (WT and recq4) using Nanopore-seq and COmapper

: Project data type: Other

Scope:: Monoisolate

European Bioinformatics Institute

Accession:: PRJEB79134
ID:: 1151485

Select item 11449885.

HPV induced R-loop formation represses innate immune gene expression while activating DNA damage repair pathways [H3K9me3 ChIP seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Northwestern University

Accession:: PRJNA1144988
ID:: 1144988

Select item 11449876.

HPV induced R-loop formation represses innate immune gene expression while activating DNA damage repair pathways [gH2AX ChIP seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Northwestern University

Accession:: PRJNA1144987
ID:: 1144987

Select item 11449707.

HPV induced R-loop formation represses innate immune gene expression while activating DNA damage repair pathways [H3K36me3 ChIP seq]

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Northwestern University

Accession:: PRJNA1144970
ID:: 1144970

Select item 11444518.

HPV induced R-loop formation represses innate immune gene expression while activating DNA damage repair pathways

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Epigenomics

Scope:: Multiisolate

Northwestern University

Accession:: PRJNA1144451
ID:: 1144451

Select item 11406429.

Cannabis Reference Pangenome

Taxonomy:: Cannabis sativa

: Umbrella project

The Salk Institute for Biological Studies

Accession:: PRJNA1140642
ID:: 1140642

Select item 113270110.

Intestinal Microbiome Confers Robust Colonization Resistance Against Necrotic Enteritis in Chickens

: Project data type: Raw sequence reads

Scope:: Multispecies

Oklahoma State University

Accession:: PRJNA1132701
ID:: 1132701

Select item 113052811.

Pooled metagenome of seawater microbial communities from East Sound, Orcas Island, WA, USA

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Washington

Accession:: PRJNA1130528
ID:: 1130528

Select item 109996212.

seawater metagenome

Microbiome of seawater samples incubated with brown algae carbohydrates.

Taxonomy:: seawater metagenome

: Project data type: Targeted Locus (Loci)

Scope:: Environment

Laboratory of Basic and Applied Molecular Biotechnology, Division of Food Science and Biotechnology, Graduate School of Agriculture, Kyoto University

Accession:: PRJDB17899
ID:: 1099962

Select item 108323313.

RPA and Rad27 limit templated and inverted insertions at DNA breaks

Organism:: Saccharomyces cerevisiae

Taxonomy:: Saccharomyces cerevisiae (brewer's yeast)

: Project data type: Other

Scope:: Multiisolate

Boston children's hospital

Accession:: PRJNA1083233
ID:: 1083233

Select item 107323814.

An age specific platelet differentiation path from hematopoietic stem cells causes thrombocytosis and exacerbated thrombosis

Organism:: Mus musculus

Taxonomy:: Mus musculus (house mouse)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Institute for the Biology of Stem Cells, University of California Santa Cruz

Accession:: PRJNA1073238
ID:: 1073238

Select item 105628215.

Saracatinib Promotes Definitive Endoderm Differentiation by Inhibition of FAK-YAP Signaling Axis

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

The First Affiliated Hospital of c Jiaotong University

Accession:: PRJNA1056282
ID:: 1056282

Select item 105559016.

A POLR3B-variant reveals a Pol III transcriptome response dependent on La protein/SSB

: Project data type: Raw sequence reads

Scope:: Multispecies

NIH

Accession:: PRJNA1055590
ID:: 1055590

Select item 103717417.

Host genome dynamics in response to MVA infection

: Project data type: Raw sequence reads

Scope:: Multispecies

Los Alamos National Laboratory

Accession:: PRJNA1037174
ID:: 1037174

Select item 103550618.

A recombination-resistant genome for live attenuated and stable PEDV vaccines by engineering the transcriptional regulatory sequences

Taxonomy:: Porcine epidemic diarrhea virus

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Shenzhen Nanshan People's Hospital and the 6th Affiliated Hospital of Shenzhen University Health Science Center, Department of Pain Medicine and Shenzhen Municipal Key Laboratory for Pain Medicine

Accession:: PRJNA1035506
ID:: 1035506

Select item 103316019.

Yeast EndoG prevents genome instability by degrading extranuclear DNA species

Organism:: Saccharomyces cerevisiae

Taxonomy:: Saccharomyces cerevisiae (brewer's yeast)

: Project data type: Other

Scope:: Multiisolate

Boston children's hospital

Accession:: PRJNA1033160
ID:: 1033160

Select item 103053220.

Effects of biochar addition and wheat straw size on greenhouse gas emissions during the pig manure/wheat straw aerobic composting: based on pore structure and baterial communities

: Project data type: Raw sequence reads

Scope:: Multispecies

China Agricultural University

Accession:: PRJNA1030532
ID:: 1030532

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