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Organizing biological data
Long-term effects of Omicron BA.2 breakthrough infection on immunity-metabolism balance: a 6-month prospective study
Three new Theobroma cacao chromosome level genome assemblies for SCA_6, IMC-67 and POUND 7
Gene expression analysis in untreated or 1 mM iAs (6-120 hours post fertilization; hpf), pooled (10) whole larvae 5 days post fertilization (dpf): wild-type TAB14 compared to as3mt mutant larvae [whole lavae]
Regulation of endothelial DNA methylation by the sustained response to IL-6
Rattus norvegicus strain:Fischer 344 | breed:inbred
MoTrPAC: Endurance exercise training study in 6 months old rats
Breast cancer mutations HER2V777L and PIK3CAH1047R activate the p21-CDK4/6 –Cyclin D1 axis driving tumorigenesis and drug resistance.
Staphylococcus aureus
Staphylococcus aureus 6 Mexican mastitic (cattle) strains: WGS MiqSeq Illumina (short reads)
Liver Stromal Cells Restrict Macrophage Maturation and Stromal IL-6 Limits the Differentiation of Cirrhosis-linked Macrophages
Jasmonates and Histone deacetylase 6 activate Arabidopsis genome-wide histone acetylation and methylation during the early acute stress response
Colonic microbial metagenome of stressed pregnant C57BL/6 Jax mice
Exome capture sequencing of 403 barley accessions for the analysis of copy number variants
We exome captured and sequenced 397 diverse barley accessions to carry out a genome-wide analysis copy number variants affecting coding sequences. The Roche Nimblegen exome capture array was used to enrich for exon sequences (http://sequencing.roche.com/products/nimblegen-seqcap-target-enrichment/seqcap-ez-system/seqcap-ez-designs.html). The enriched samples were then sequenced using an Illumina HiSeq 2000 sequencer. An average of 2 x 24.6 million paired end Illumina reads per sample were generated, which correspond to approximately 80x coverage of the 61.3 Mbp exome capture space.
Genome-wide profiling of age-dependent changes in gene expression between L4 larvae and Day 6 adult Caenorhabditis elegans
Cephalotaxus harringtonia cultivar:fastigiata
Cephalotaxus harringtonia fastigiata Gene Expression Profiling - New Needles-6 transcriptome
Cephalotaxus harringtonia fastigiata Gene Expression Profiling - Old Needles-6 transcriptome
C57BL/6 substrain differences in inflammatory and neuropathic nociception and genetic mapping of a major quantitative trait locus underlying acute thermal nociception
RNA-seq of PC3 prostate cancer cell line xenografts in mice administered the ghrelin receptor antagonist [D-Lys3]-GHRP-6 or PBS for two weeks
Evaluation of anionic surfactant removal in anaerobic reactor with Fe(III) supplementation
The objective of this study was to evaluate the removal of linear alkylbenzene sulfonate (LAS) associated with Fe(III) supplementation using an expanded granular sludge bed (EGSB) reactor. The reactor was inoculated with a granular sludge obtained from a full scale UASB plant that treated effluent from a poultry slaughterhouse and fed with synthetic wastewater containing a specific LAS loading rate (SLLR) of 1.5 mg.gVS-1.d-1 (~ 16.4 mgLAS L-1 influent) and supplied with 7.276 µMol L-1 (~ 410 mgFe L-1) of Fe(III). The biomasses from the inoculum and at the end of the EGSB-Fe operation (127 days) were characterized using 16S rRNA Ion Tag sequencing. An increase of 20 % in the removal efficiency was observed compared to reactors without Fe(III) supplementation that was reported in the literature, and the LAS removal was approximately 84 %. The Fe(III) reduction was dissimilatory (the total iron concentration in the influent and effluent were similar) and reached approximately 64 %. The higher Fe(III) reduction and LAS removal were corroborated by the enrichment of genera, such as Shewanella (only EGSB-Fe - 0.5 %) and Geobacter (1 % - inoculum; 18 % - EGSB-Fe). Furthermore, the enrichment of genera that degrade LAS and/or aromatic compounds (3.8 % - inoculum; 29.6 % – EGSB-Fe of relative abundance) was observed for a total of 20 different genera.
Homo sapiens
Expression data from Jaridon 6 on the human esophageal cancer cells
Arabidopsis thaliana
Infection of Arabidopsis thaliana seedlings (Col-0, UBQ10::YFP-TCP14-4, tcp14-6 and coi1-16) with the Pseudomonas syringae strain DC3000 cor-
Affymetrix SNP 6.0 array data for gastric adenocarcinoma and some matched normals
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