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Organizing biological data

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The following terms were not found in BioProject: 42logical, stest12, similarbj.

Select item 11395271.

Scrub Typhus Cluster Investigation and Risk Factors in Sundargarh District, Odisha, India, October 2023

Molecular Epidemiology of Orientia tsutsugamushi in Chiggers collected from Sundargarh district Odisha, Indi

: Project data type: Other

Scope:: Monoisolate

Indian Biological Data Centre

Accession:: PRJEB77515
ID:: 1139527

Select item 9449502.

Stimulons of Vibrio parahaemolyticus RIMD2210633 by 1% arabinose and 0.2% chloramphenicol

: Project data type: Raw sequence reads

Scope:: Multispecies

Affiliated Nantong Hospital 3 of Nantong University

Accession:: PRJNA944950
ID:: 944950

Select item 7927843.

Ancient DNA from Lice and Nits

Ancient human genomes and environmental DNA from the cement attaching 2,000 year old head lice nits

: Project data type: Other

Scope:: Monoisolate

CENTRE FOR GEOGENETICS

Accession:: PRJEB49684
ID:: 792784

Select item 6050234.

New insights of Arabidopsis transcriptome complexity revealed by direct sequencing of native RNAs

Organism:: Arabidopsis thaliana

Taxonomy:: Arabidopsis thaliana (thale cress)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Hong Kong Baptist University

Accession:: PRJNA605023
ID:: 605023

Select item 6033215.

A highly scalable method for joint whole genome sequencing and gene expression profiling of single cells

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Other

Scope:: Multiisolate

BioClinicum J6:30, Oncology-Pathology, Karolinska Institutet

Accession:: PRJNA603321
ID:: 603321

Select item 5887766.

Transcriptomic analysis of S. aureus mutant strains

: Project data type: Raw sequence reads

Scope:: Multispecies

University of Heidelberg, IPMB

Accession:: PRJNA588776
ID:: 588776

Select item 5343687.

A Novel Method For Microsatellite Instability Detection by Liquid Biopsy Based On Next Generation Sequencing

: Project data type: Raw sequence reads

Scope:: Multispecies

Geneis

Accession:: PRJNA534368
ID:: 534368

Select item 5127908.

Custom Y-adapters for improved library preparation for Ion Torrent sequencing

: Project data type: Other

Scope:: Monoisolate

Friedrich-Loeffler-Institut

Accession:: PRJEB30332
ID:: 512790

Select item 4876069.

Transcriptomic analysis of HeLa cells depleted in CELF1, ELAVL1, and both

Organism:: Homo sapiens

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Univ Rennes

Accession:: PRJNA487606
ID:: 487606

Select item 30119310.

Sesamum indicum

Updated sesame genome assembly and fine mapping of plant height and seed coat color QTLs using a new high-density genetic map

Taxonomy:: Sesamum indicum (sesame)

: Project data type: Genome sequencing

Scope:: Other

BGI

Accession:: PRJNA301193
ID:: 301193

Select item 29930711.

Homo sapiens

Next generation sequencing identifies circulating microRNAs in cardiac arrest patients

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Cardiovascular Research Unit, LIH

Accession:: PRJNA299307
ID:: 299307

Select item 29013112.

Homo sapiens

CLL exosomes modulate the transcriptome and behaviour of recipient stromal cells and are selectively enriched in miR-202-3p [mirBase 13]

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Haematology, Molecular and Clinical Cancer Medicine, University of Liverpool

Accession:: PRJNA290131
ID:: 290131

Select item 29013013.

Homo sapiens

CLL exosomes modulate the transcriptome and behaviour of recipient stromal cells and are selectively enriched in miR-202-3p [mirBase 15]

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Haematology, Molecular and Clinical Cancer Medicine, University of Liverpool

Accession:: PRJNA290130
ID:: 290130

Select item 24535814.

Oryza sativa

Improved tagmentation-based whole genome bisulfite sequencing for input DNA from less than 100 cells

Taxonomy:: Oryza sativa (Asian cultivated rice)

: Project data type: Epigenomics

Scope:: Multiisolate

Agricultural Genomes Institute at Shenzhen

Accession:: PRJNA245358
ID:: 245358

Select item 18869715.

Rattus norvegicus

Cardiac phase-targeted dynamic load on left ventricle differentially regulates phase-sensitive gene expressions and pathway activation

Taxonomy:: Rattus norvegicus (Norway rat)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

CARDIOVASCULAR MEDICINE, GRADUATE SCHOOL OF MEDICAL SCIENCES, KYUSHU UNIVERSITY

Accession:: PRJNA188697
ID:: 188697

Select item 14139316.

Homo sapiens

Whole Blood Transcriptional Modules generated on Illumina Hu-6 V2 Beadchips

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Baylor Institute for Immunology Research

Accession:: PRJNA141393
ID:: 141393

Select item 11749317.

Homo sapiens

Human keratinocytes exposed to tungsten carbide and tungsten carbide cobalt nanoparticles and cobalt chloride

Taxonomy:: Homo sapiens (human)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Scholz, Bioanalytical Ecotoxicology, UFZ Helmholtz Centre for Environmental Research

Accession:: PRJNA117493
ID:: 117493

Select item 10359518.

Rattus norvegicus

Differential susceptibility of Wistar Kyoto and spontaneously hypertensive rats to diesel exhaust particle exposure.

Taxonomy:: Rattus norvegicus (Norway rat)

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

B143-01, NHEERL, ETD, USEPA

Accession:: PRJNA103595
ID:: 103595

Select item 9773919.

Nakaseomyces glabratus

Transcriptional profile of Candida glabrata ingested by murine macrophage-like cells (J774A.1) for 2 and 6 hours

Taxonomy:: Nakaseomyces glabratus

: Project data type: Transcriptome or Gene expression

Scope:: Multiisolate

Molecular Biology & Genetics, Johns Hopkins Univ. School of Medicine

Accession:: PRJNA97739
ID:: 97739

Select item 9514120.

Saccharomyces cerevisiae

Genome-wide mapping of DNA re-replication in S. cerevisiae

Taxonomy:: Saccharomyces cerevisiae (brewer's yeast)

: Project data type: Variation

Scope:: Multiisolate

Li, Microbiology and Immunology, University of California, San Francisco

Accession:: PRJNA95141
ID:: 95141

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