U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJNA986189 ID: 986189

Limnanthes douglasii Genomic Resources

Limnanthes douglasii, Douglas' meadowfoam, is an iconic spring wildflower of widespread distribution. The six recognized subspecies form a dominant feature of California's vernal pool and allied wetland systems and provide a critical resource for specialist pollinators. While the taxon is found throughout the northern half of California, two subspecies - and two sister species in Section Limnanthes - are rare, threatened or endangered. These data have been produced as part of the CCGP. Sequencing was conducted with HiFi Pacific Biosciences long reads at UCDavis Genome Core, Dovetail's OmniC libraries, and Illumina sequencing at UCBerkeley QB3 Genomics Core. For more information, go to: ccgproject.org
AccessionPRJNA986189
TypeUmbrella project
SubmissionRegistration date: 21-Jun-2023
California Conservation Genomics Project
Related Resources
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)2
SRA Experiments7
Other datasets
BioSample5
Assembly2
SRA Data Details
ParameterValue
Data volume, Gbases288
Data volume, Tbytes0.12
This project encompasses the following 4 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Scaffolds
SRA or Trace
Total

2
1
3
BioProject
accession
Assembly
level
OrganismTitle
PRJNA1126705 SRA or TraceLimnanthes douglasiiLimnanthes douglasii Genome sequencing and assembly (University of California,...)
PRJNA998055 ScaffoldsLimnanthes douglasii subsp. niveaLimnanthes douglasii subsp. nivea haplotype 2 genome sequencing (UCLA)
PRJNA998056 ScaffoldsLimnanthes douglasii subsp. niveaLimnanthes douglasii subsp. nivea haplotype 1 genome sequencing (UCLA)
transcriptome1
BioProject
accession
OrganismTitle
PRJNA1013278Limnanthes douglasiiLimnanthes douglasii Transcriptome or Gene expression (UCLA)

Supplemental Content

Related Resources

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center