This SuperSeries is composed of the SubSeries listed below.
Overall design: Refer to individual Series
| Accession | PRJNA983728; GEO: GSE234914 |
| Type | Umbrella project |
| Publications | Feng AC et al., "The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling.", Immunity, 2024 Mar 12;57(3):462-477.e9 |
| Submission | Registration date: 14-Jun-2023
Smale Lab, MIMG, University of California Los Angeles |
| Relevance | Superseries |
Project Data:
| Resource Name | Number
of Links |
|---|
| Sequence data |
| SRA Experiments | 133 |
| Publications |
| PubMed | 1 |
| Other datasets |
| BioSample | 133 |
| GEO DataSets | 9 |
Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity encompasses the following 8 sub-projects:
| Project Type | Number of Projects |
| Epigenomics | 5 |
BioProject
accession | Organism | Title |
|---|
| PRJNA983736 | Mus musculus | Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [ATAC_MQ] (Smale Lab, MIMG, UCLA) | | PRJNA982770 | Mus musculus | Toll-Like Receptor-induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [BMDM_ATAC] (Smale Lab, MIMG, UCLA) | | PRJNA985649 | Mus musculus | Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [ChIP-Seq] (Smale Lab, MIMG, UCLA) | | PRJNA1043740 | Mus musculus | Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [BMDM_ATAC_2] (Smale Lab, MIMG, UCLA) | | PRJNA1045639 | Mus musculus | NF-kB Broadly Orchestrates Nucleosome Remodeling during the Primary Response to Toll-Like Receptor 4 Signaling [scATAC-seq] (Smale Lab, MIMG, UCLA) |
|
| Other | 2 |
BioProject
accession | Organism | Title |
|---|
| PRJNA1126259 | Mus musculus | The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling [CHiC] (Smale Lab, MIMG, UCLA) | | PRJNA1126257 | Mus musculus | The transcription factor NF-κB orchestrates nucleosome remodeling during the primary response to Toll-like receptor 4 signaling [4C] (Smale Lab, MIMG, UCLA) |
|
| Transcriptome or Gene expression | 1 |
BioProject
accession | Organism | Title |
|---|
| PRJNA985653 | Mus musculus | Toll-Like Receptor-Induced Nucleosome Remodeling Achieved by Broadly Acting NF-kB in Collaboration with Transcription Factors Conferring Selectivity [RNA-Seq] (Smale Lab, MIMG, UCLA) |
|