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Accession: PRJNA983111 ID: 983111

Bradyrhizobium

Phylogenetic and population structure of the nod-free but nodulating Bradyrhizobium phylogroup

we sequenced 208 new PB members predominantly associated with rice. The extended PB phylogroup comprises three main clades: a basal clade with significant expansion of its diversity, followed by the diversification of a singleton clade from a new clade exclusively represented by our strains. More...
AccessionPRJNA983111
Data TypeGenome sequencing and assembly
ScopeMultiisolate
OrganismBradyrhizobium[Taxonomy ID: 374]
Bacteria; Pseudomonadota; Alphaproteobacteria; Hyphomicrobiales; Nitrobacteraceae; Bradyrhizobium
SubmissionRegistration date: 4-Oct-2023
The Chinese University of Hong Kong
RelevanceAgricultural
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)208
SRA Experiments208
Other datasets
BioSample208
Assembly208
Assembly details:
Assembly levelNumber of Assemblies
208
208
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_032381575.1ContigJAUHIW000000000SAMN35993483
SZCCHNF30212
GCA_032381515.1ContigJAUHIV000000000SAMN35993481
SZCCHNG3015
GCA_032489995.1ContigJAUEZC000000000SAMN35993482
SZCCHNGR1005
GCA_032381555.1ContigJAUHIU000000000SAMN35993541
SZCCHNPS1003
GCA_032489975.1ContigJAUEZB000000000SAMN35993542
SZCCHNPS10061
GCA_032381395.1ContigJAUHIT000000000SAMN35993543
SZCCHNPS10062
GCA_032489935.1ContigJAUEZA000000000SAMN35993544
SZCCHNPS2010
GCA_032381435.1ContigJAUHIS000000000SAMN35993545
SZCCHNR1002
GCA_032489955.1ContigJAUEYZ000000000SAMN35993546
SZCCHNR1004
GCA_032489915.1ContigJAUEYY000000000SAMN35993547
SZCCHNR1007
GCA_032489895.1ContigJAUEYX000000000SAMN35993548
SZCCHNR1011
GCA_032489875.1ContigJAUEYW000000000SAMN35993549
SZCCHNR1015
GCA_032489835.1ContigJAUEYV000000000SAMN35993550
SZCCHNR1016
GCA_032381375.1ContigJAUHIR000000000SAMN35993551
SZCCHNR1017
GCA_032381315.1ContigJAUHIQ000000000SAMN35993552
SZCCHNR1018
GCA_032381335.1ContigJAUHIP000000000SAMN35993553
SZCCHNR1019
GCA_032489855.1ContigJAUEYU000000000SAMN35993554
SZCCHNR1020
GCA_032489815.1ContigJAUEYT000000000SAMN35993555
SZCCHNR1021
GCA_032489795.1ContigJAUEYS000000000SAMN35993556
SZCCHNR1022
GCA_032489775.1ContigJAUEYR000000000SAMN35993557
SZCCHNR1023
GCA_032489755.1ContigJAUEYQ000000000SAMN35993558
SZCCHNR1025
GCA_032489735.1ContigJAUEYP000000000SAMN35993559
SZCCHNR1030
GCA_032381215.1ContigJAUHJN000000000SAMN35993560
SZCCHNR1035
GCA_032489715.1ContigJAUEYO000000000SAMN35993561
SZCCHNR1039
GCA_032489675.1ContigJAUEYN000000000SAMN35993562
SZCCHNR1043
GCA_032489695.1ContigJAUEYM000000000SAMN35993563
SZCCHNR1044
GCA_032489655.1ContigJAUEYL000000000SAMN35993564
SZCCHNR1045
GCA_032489635.1ContigJAUEYK000000000SAMN35993565
SZCCHNR1047
GCA_032489615.1ContigJAUEYJ000000000SAMN35993566
SZCCHNR1051
GCA_032381235.1ContigJAUHJM000000000SAMN35993567
SZCCHNR1053
GCA_032489575.1ContigJAUEYI000000000SAMN35993568
SZCCHNR1058
GCA_032489595.1ContigJAUEYH000000000SAMN35993569
SZCCHNR1064
GCA_032489555.1ContigJAUEYG000000000SAMN35993570
SZCCHNR1065
GCA_032489535.1ContigJAUEYF000000000SAMN35993571
SZCCHNR1066
GCA_032489515.1ContigJAUEYE000000000SAMN35993572
SZCCHNR1070
GCA_032381195.1ContigJAUHJL000000000SAMN35993573
SZCCHNR1075
GCA_032489475.1ContigJAUEYD000000000SAMN35993574
SZCCHNR1082
GCA_032381035.1ContigJAUHJK000000000SAMN35993575
SZCCHNR1083
GCA_032489495.1ContigJAUEYC000000000SAMN35993576
SZCCHNR1085
GCA_032489455.1ContigJAUEYB000000000SAMN35993577
SZCCHNR1091
GCA_032489435.1ContigJAUEYA000000000SAMN35993578
SZCCHNR1092
GCA_032381175.1ContigJAUHJJ000000000SAMN35993579
SZCCHNR1093
GCA_032489415.1ContigJAUEXZ000000000SAMN35993580
SZCCHNR1097
GCA_032489375.1ContigJAUEXY000000000SAMN35993581
SZCCHNR1098
GCA_032489395.1ContigJAUEXX000000000SAMN35993582
SZCCHNR1099
GCA_032489355.1ContigJAUEXW000000000SAMN35993583
SZCCHNR2001
GCA_032489335.1ContigJAUEXV000000000SAMN35993584
SZCCHNR2002
GCA_032489315.1ContigJAUEXU000000000SAMN35993585
SZCCHNR2003
GCA_032381135.1ContigJAUHJI000000000SAMN35993586
SZCCHNR2009
GCA_032381015.1ContigJAUHJH000000000SAMN35993587
SZCCHNR2011
GCA_032380975.1ContigJAUHJG000000000SAMN35993588
SZCCHNR2012
GCA_032489295.1ContigJAUEXT000000000SAMN35993589
SZCCHNR2017
GCA_032489275.1ContigJAUEXS000000000SAMN35993590
SZCCHNR2020
GCA_032489235.1ContigJAUEXR000000000SAMN35993591
SZCCHNR2023
GCA_032489255.1ContigJAUEXQ000000000SAMN35993592
SZCCHNR2026
GCA_032380995.1ContigJAUHJF000000000SAMN35993593
SZCCHNR2028
GCA_032489195.1ContigJAUEXP000000000SAMN35993594
SZCCHNR2031
GCA_032489215.1ContigJAUEXO000000000SAMN35993595
SZCCHNR2032
GCA_032489155.1ContigJAUEXN000000000SAMN35993596
SZCCHNR2034
GCA_032489175.1ContigJAUEXM000000000SAMN35993597
SZCCHNR2035
GCA_032489135.1ContigJAUEXL000000000SAMN35993598
SZCCHNR3003
GCA_032380895.1ContigJAUHJE000000000SAMN35993599
SZCCHNR3006
GCA_032380875.1ContigJAUHJD000000000SAMN35993600
SZCCHNR3007
GCA_032489115.1ContigJAUEXK000000000SAMN35993601
SZCCHNR3008
GCA_032489075.1ContigJAUEXJ000000000SAMN35993602
SZCCHNR3010
GCA_032380815.1ContigJAUHJC000000000SAMN35993603
SZCCHNR3012
GCA_032489095.1ContigJAUEXI000000000SAMN35993604
SZCCHNR3013
GCA_032489035.1ContigJAUEXH000000000SAMN35993605
SZCCHNR3014
GCA_032489055.1ContigJAUEXG000000000SAMN35993606
SZCCHNR3015
GCA_032488995.1ContigJAUEXF000000000SAMN35993607
SZCCHNR3016
GCA_032489015.1ContigJAUEXE000000000SAMN35993608
SZCCHNR3017
GCA_032488955.1ContigJAUEXD000000000SAMN35993609
SZCCHNR3020
GCA_032488975.1ContigJAUEXC000000000SAMN35993610
SZCCHNR3021
GCA_032488935.1ContigJAUEXB000000000SAMN35993611
SZCCHNR3022
GCA_032488895.1ContigJAUEXA000000000SAMN35993612
SZCCHNR3025
GCA_032380795.1ContigJAUHJB000000000SAMN35993613
SZCCHNR3027
GCA_032488915.1ContigJAUEWZ000000000SAMN35993614
SZCCHNR3028
GCA_032488875.1ContigJAUEWY000000000SAMN35993615
SZCCHNR3030
GCA_032488855.1ContigJAUEWX000000000SAMN35993616
SZCCHNR3032
GCA_032488835.1ContigJAUEWW000000000SAMN35993617
SZCCHNR3036
GCA_032488795.1ContigJAUEWV000000000SAMN35993618
SZCCHNR3037
GCA_032488815.1ContigJAUEWU000000000SAMN35993619
SZCCHNR3038
GCA_032488775.1ContigJAUEWT000000000SAMN35993620
SZCCHNR3039
GCA_032488755.1ContigJAUEWS000000000SAMN35993621
SZCCHNR3042
GCA_032488735.1ContigJAUEWR000000000SAMN35993622
SZCCHNR3043
GCA_032488695.1ContigJAUEWQ000000000SAMN35993623
SZCCHNR3044
GCA_032488715.1ContigJAUEWP000000000SAMN35993624
SZCCHNR30461
GCA_032488655.1ContigJAUEWO000000000SAMN35993625
SZCCHNR3047
GCA_032380775.1ContigJAUHJA000000000SAMN35993626
SZCCHNR3049
GCA_032488675.1ContigJAUEWN000000000SAMN35993627
SZCCHNR3050
GCA_032488635.1ContigJAUEWM000000000SAMN35993628
SZCCHNR3052
GCA_032488615.1ContigJAUEWL000000000SAMN35993629
SZCCHNR3053
GCA_032488595.1ContigJAUEWK000000000SAMN35993630
SZCCHNR3054
GCA_032488575.1ContigJAUEWJ000000000SAMN35993631
SZCCHNR3055
GCA_032488535.1ContigJAUEWI000000000SAMN35993632
SZCCHNR3056
GCA_032488555.1ContigJAUEWH000000000SAMN35993633
SZCCHNR3057
GCA_032488515.1ContigJAUEWG000000000SAMN35993634
SZCCHNR3058
GCA_032488495.1ContigJAUEWF000000000SAMN35993635
SZCCHNR3060
GCA_032488475.1ContigJAUEWE000000000SAMN35993636
SZCCHNR30611
GCA_032488455.1ContigJAUEWD000000000SAMN35993637
SZCCHNR30612
GCA_032488415.1ContigJAUEWC000000000SAMN35993638
SZCCHNR3063
GCA_032488435.1ContigJAUEWB000000000SAMN35993639
SZCCHNR3064
GCA_032380715.1ContigJAUHIZ000000000SAMN35993640
SZCCHNR3065
GCA_032488395.1ContigJAUEWA000000000SAMN35993641
SZCCHNR3068
GCA_032488375.1ContigJAUEVZ000000000SAMN35993642
SZCCHNR3070
GCA_032488355.1ContigJAUEVY000000000SAMN35993643
SZCCHNR3071
GCA_032488335.1ContigJAUEVX000000000SAMN35993644
SZCCHNR3072
GCA_032488315.1ContigJAUEVW000000000SAMN35993645
SZCCHNR3073
GCA_032488275.1ContigJAUEVV000000000SAMN35993646
SZCCHNR3075
GCA_032488295.1ContigJAUEVU000000000SAMN35993647
SZCCHNR3077
GCA_032378455.1ContigJAUHIY000000000SAMN35993648
SZCCHNR3078
GCA_032488255.1ContigJAUEVT000000000SAMN35993649
SZCCHNR3082
GCA_032488215.1ContigJAUEVS000000000SAMN35993650
SZCCHNR3084
GCA_032488235.1ContigJAUEVR000000000SAMN35993651
SZCCHNR3086
GCA_032488175.1ContigJAUEVQ000000000SAMN35993652
SZCCHNR3089
GCA_032378275.1ContigJAUHIX000000000SAMN35993653
SZCCHNR3090
GCA_032488195.1ContigJAUEVP000000000SAMN35993654
SZCCHNR3091
GCA_032488155.1ContigJAUEVO000000000SAMN35993655
SZCCHNR30921
GCA_032378175.1ContigJAUHIO000000000SAMN35993656
SZCCHNR30922
GCA_032488135.1ContigJAUEVN000000000SAMN35993657
SZCCHNR3093
GCA_032488095.1ContigJAUEVK000000000SAMN35993658
SZCCHNR3094
GCA_032488115.1ContigJAUEVM000000000SAMN35993659
SZCCHNR30941
GCA_032488075.1ContigJAUEVL000000000SAMN35993660
SZCCHNR30942
GCA_032488055.1ContigJAUEVJ000000000SAMN35993661
SZCCHNR3095
GCA_032378315.1ContigJAUHIN000000000SAMN35993662
SZCCHNR3097
GCA_032488035.1ContigJAUEVI000000000SAMN35993663
SZCCHNR30992
GCA_032487995.1ContigJAUEVH000000000SAMN35993664
SZCCHNR31011
GCA_032488015.1ContigJAUEVG000000000SAMN35993665
SZCCHNR31012
GCA_032378195.1ContigJAUHIM000000000SAMN35993666
SZCCHNR31031
GCA_032487975.1ContigJAUEVF000000000SAMN35993667
SZCCHNR31032
GCA_032487955.1ContigJAUEVE000000000SAMN35993668
SZCCHNR3104
GCA_032487915.1ContigJAUEVD000000000SAMN35993669
SZCCHNR3105
GCA_032378095.1ContigJAUHIL000000000SAMN35993670
SZCCHNR3107
GCA_032487935.1ContigJAUEVC000000000SAMN35993671
SZCCHNR3108
GCA_032378075.1ContigJAUHIK000000000SAMN35993672
SZCCHNR3109
GCA_032487895.1ContigJAUEVB000000000SAMN35993673
SZCCHNR3110
GCA_032487875.1ContigJAUEVA000000000SAMN35993674
SZCCHNR3111
GCA_032487855.1ContigJAUEUZ000000000SAMN35993675
SZCCHNR3112
GCA_032487835.1ContigJAUEUY000000000SAMN35993676
SZCCHNR31152
GCA_032487815.1ContigJAUEUX000000000SAMN35993677
SZCCHNR3116
GCA_032377935.1ContigJAUHIJ000000000SAMN35993678
SZCCHNR3117
GCA_032487795.1ContigJAUEUW000000000SAMN35993679
SZCCHNR3118
GCA_032487775.1ContigJAUEUV000000000SAMN35993680
SZCCHNR3119
GCA_032487755.1ContigJAUEUU000000000SAMN35993681
SZCCHNR31202
GCA_032487735.1ContigJAUEUT000000000SAMN35993682
SZCCHNR3123
GCA_032487695.1ContigJAUEUS000000000SAMN35993683
SZCCHNR3126
GCA_032487715.1ContigJAUEUR000000000SAMN35993684
SZCCHNR3131
GCA_032487655.1ContigJAUEUQ000000000SAMN35993685
SZCCHNR31381
GCA_032487675.1ContigJAUEUP000000000SAMN35993686
SZCCHNR31401
GCA_032487615.1ContigJAUEUO000000000SAMN35993687
SZCCHNR31402
GCA_032487635.1ContigJAUEUN000000000SAMN35993688
SZCCHNR3142
GCA_032377915.1ContigJAUHII000000000SAMN35993484
SZCCHNRI1001
GCA_032377835.1ContigJAUHIH000000000SAMN35993485
SZCCHNRI1002
GCA_032487595.1ContigJAUEUM000000000SAMN35993486
SZCCHNRI1003
GCA_032377895.1ContigJAUHIG000000000SAMN35993487
SZCCHNRI1005
GCA_032487575.1ContigJAUEUL000000000SAMN35993488
SZCCHNRI1009
GCA_032487555.1ContigJAUEUK000000000SAMN35993489
SZCCHNRI1029
GCA_032487495.1ContigJAUEUJ000000000SAMN35993490
SZCCHNRI1058
GCA_032487515.1ContigJAUEUI000000000SAMN35993491
SZCCHNRI1073
GCA_032378395.1ContigJAUHIF000000000SAMN35993492
SZCCHNRI2007
GCA_032485115.1ContigJAUEUH000000000SAMN35993493
SZCCHNRI2009
GCA_032378335.1ContigJAUHIE000000000SAMN35993494
SZCCHNRI2010
GCA_032485095.1ContigJAUEUG000000000SAMN35993495
SZCCHNRI2013
GCA_032485075.1ContigJAUEUF000000000SAMN35993496
SZCCHNRI2014
GCA_032485055.1ContigJAUEUE000000000SAMN35993497
SZCCHNRI20481
GCA_032485035.1ContigJAUEUD000000000SAMN35993498
SZCCHNRI2049
GCA_032484975.1ContigJAUEUC000000000SAMN35993499
SZCCHNRI3016
GCA_032485015.1ContigJAUEUB000000000SAMN35993500
SZCCHNRI3018
GCA_032484995.1ContigJAUEUA000000000SAMN35993501
SZCCHNRI3037
GCA_032484955.1ContigJAUETZ000000000SAMN35993502
SZCCHNRI3042
GCA_032377735.1ContigJAUHID000000000SAMN35993503
SZCCHNRI3043
GCA_032484915.1ContigJAUETY000000000SAMN35993504
SZCCHNRI30511
GCA_032484935.1ContigJAUETX000000000SAMN35993505
SZCCHNRI30512
GCA_032484895.1ContigJAUETW000000000SAMN35993506
SZCCHNRI3052
GCA_032484875.1ContigJAUETV000000000SAMN35993507
SZCCHNS1008
GCA_032484855.1ContigJAUETU000000000SAMN35993508
SZCCHNS1012
GCA_032484835.1ContigJAUETT000000000SAMN35993509
SZCCHNS1022
GCA_032484775.1ContigJAUETS000000000SAMN35993510
SZCCHNS1049
GCA_032484785.1ContigJAUETR000000000SAMN35993511
SZCCHNS1050
GCA_032484815.1ContigJAUETQ000000000SAMN35993512
SZCCHNS1054
GCA_032484755.1ContigJAUETP000000000SAMN35993513
SZCCHNS2002
GCA_032378235.1ContigJAUHIC000000000SAMN35993514
SZCCHNS2005
GCA_032484735.1ContigJAUETO000000000SAMN35993515
SZCCHNS2006
GCA_032377715.1ContigJAUHIB000000000SAMN35993516
SZCCHNS2015
GCA_032484715.1ContigJAUETN000000000SAMN35993517
SZCCHNS2017
GCA_032377635.1ContigJAUHIA000000000SAMN35993518
SZCCHNS2021
GCA_032377575.1ContigJAUHHZ000000000SAMN35993519
SZCCHNS2022
GCA_032484675.1ContigJAUETM000000000SAMN35993520
SZCCHNS2096
GCA_032377435.1ContigJAUHHY000000000SAMN35993521
SZCCHNS3002
GCA_032484695.1ContigJAUETL000000000SAMN35993522
SZCCHNS3003
GCA_032484655.1ContigJAUETK000000000SAMN35993523
SZCCHNS3004
GCA_032484635.1ContigJAUETJ000000000SAMN35993524
SZCCHNS30051
GCA_032484575.1ContigJAUETI000000000SAMN35993525
SZCCHNS30052
GCA_032484595.1ContigJAUETH000000000SAMN35993526
SZCCHNS30121
GCA_032484615.1ContigJAUETG000000000SAMN35993527
SZCCHNS30122
GCA_032484555.1ContigJAUETF000000000SAMN35993528
SZCCHNS3014
GCA_032484535.1ContigJAUETE000000000SAMN35993529
SZCCHNS3016
GCA_032484515.1ContigJAUETD000000000SAMN35993530
SZCCHNS3018
GCA_032484475.1ContigJAUETC000000000SAMN35993531
SZCCHNS3051
GCA_032484495.1ContigJAUETB000000000SAMN35993532
SZCCHNS3052
GCA_032484455.1ContigJAUETA000000000SAMN35993533
SZCCHNS3053
GCA_032377455.1ContigJAUHHX000000000SAMN35993534
SZCCHNS3055
GCA_032484435.1ContigJAUESZ000000000SAMN35993535
SZCCHNS30571
GCA_032484415.1ContigJAUESY000000000SAMN35993536
SZCCHNS30572
GCA_032484395.1ContigJAUESX000000000SAMN35993537
SZCCHNS30581
GCA_032484375.1ContigJAUESW000000000SAMN35993538
SZCCHNS30582
GCA_032484335.1ContigJAUESV000000000SAMN35993539
SZCCHNS30591
GCA_032484355.1ContigJAUESU000000000SAMN35993540
SZCCHNS30592
SRA Data Details
ParameterValue
Data volume, Gbases276
Data volume, Tbytes0.22

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