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Accession: PRJNA981184 ID: 981184

Staphylococcus aureus isolated from concordantly collected sputum and oropharyngeal swabs from patients with cystic fibrosis

Concordantly collected oropharyngeal swabs and sputum from patient with cystic fibrosis
AccessionPRJNA981184
Data TypeGenome sequencing and assembly
ScopeMultispecies
Grants
  • "CTSA" (Grant ID UL1TR002537, University of Iowa)
  • "NSF supported high performance through" (Grant ID 1925590, National Science Foundation)
  • "Bacterial Interference to Prevent Staphylococcus aureus Infection" (Grant ID R01 AI137526, National Institute of Allergy and Infectious Diseases Extramural Activities)
  • "Initial Attachment of Bacteria to Mucus Strands in Cystic Fibrosis" (Grant ID K08 HL136927, National Heart, Lung, and Blood Institute)
  • "CFF Research Grant" (Grant ID FISCHE20A0‐KB, Cystic Fibrosis Foundation)
  • "CFF Research Grant" (Grant ID FISCHE21GO, Cystic Fibrosis Foundation)
  • "CFF Research and Development Program" (Grant ID STOLTZ19R0, Cystic Fibrosis Foundation)
  • "CDC Advanced Molecular Detection, Epidemiology and Laboratory Capacity Cooperative Agreement" (Grant ID NA, Center for Disease Condtrol)
SubmissionRegistration date: 7-Jun-2023
University of Iowa Hospitals and Clinics
RelevanceMedical
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (WGS master)98
Other datasets
BioSample98
Assembly98
Assembly details:
Assembly levelNumber of Assemblies
Contig Contig
Total
98
98
AssemblyLevelWGSBioSampleStrainTaxonomy
GCA_036532075.1ContigJASVBC000000000SAMN35664458
AFSW3502-1
Staphylococcus aureus
GCA_036532035.1ContigJASVAZ000000000SAMN35664461
AFSPU3564-1
Staphylococcus aureus
GCA_036532045.1ContigJASVBA000000000SAMN35664460
AFSW3518-1
Staphylococcus aureus
GCA_036532015.1ContigJASVBB000000000SAMN35664459
AFSPU3518-3
Staphylococcus aureus
GCA_036531995.1ContigJASVAY000000000SAMN35664462
AFSW3564-1
Staphylococcus aureus
GCA_036531975.1ContigJASVAX000000000SAMN35664463
AFSPU3570-1
Staphylococcus aureus
GCA_036531955.1ContigJASVAU000000000SAMN35664466
AFSW3607-4
Staphylococcus aureus
GCA_036531935.1ContigJASVAW000000000SAMN35664464
AFSW3570-3
Staphylococcus aureus
GCA_036531915.1ContigJASVAV000000000SAMN35664465
AFSPU3607-4
Staphylococcus aureus
GCA_036531895.1ContigJASVAT000000000SAMN35664467
AFSPU3613-4
Staphylococcus aureus
GCA_036531875.1ContigJASVAS000000000SAMN35664468
AFSW3613-4
Staphylococcus aureus
GCA_036531855.1ContigJASVAR000000000SAMN35664469
AFSPU3614-4
Staphylococcus aureus
GCA_036531835.1ContigJASVAQ000000000SAMN35664470
AFSW3614-4
Staphylococcus aureus
GCA_036531815.1ContigJASVAP000000000SAMN35664471
AFSPU3667-4
Staphylococcus aureus
GCA_036532535.1ContigJASVBZ000000000SAMN35664435
AFSPU3260-1
Staphylococcus aureus
GCA_036532515.1ContigJASVBX000000000SAMN35664437
AFSPU3276-1
Staphylococcus aureus
GCA_036532495.1ContigJASVBY000000000SAMN35664436
AFSW3260-1
Staphylococcus aureus
GCA_036532475.1ContigJASVBW000000000SAMN35664438
AFSW3276-1
Staphylococcus aureus
GCA_036532455.1ContigJASVBV000000000SAMN35664439
AFSPU3290-1
Staphylococcus aureus
GCA_036532435.1ContigJASVBT000000000SAMN35664441
AFSPU3294-3
Staphylococcus aureus
GCA_036532415.1ContigJASVBU000000000SAMN35664440
AFSW3290-1
Staphylococcus aureus
GCA_036532395.1ContigJASVBR000000000SAMN35664443
AFSPU3296-1
Staphylococcus aureus
GCA_036532375.1ContigJASVBS000000000SAMN35664442
AFSW3294-1
Staphylococcus aureus
GCA_036532355.1ContigJASVBQ000000000SAMN35664444
AFSW3296-1
Staphylococcus aureus
GCA_036532335.1ContigJASVBP000000000SAMN35664445
AFSPU3297-1
Staphylococcus aureus
GCA_036532315.1ContigJASVBN000000000SAMN35664447
AFSPU3347-1
Staphylococcus aureus
GCA_036532295.1ContigJASVBO000000000SAMN35664446
AFSW3297-1
Staphylococcus aureus
GCA_036532275.1ContigJASVBM000000000SAMN35664448
AFSW3347-2
Staphylococcus aureus
GCA_036532255.1ContigJASVBK000000000SAMN35664450
AFSW3400-1
Staphylococcus aureus
GCA_036532235.1ContigJASVBJ000000000SAMN35664451
AFSPU3423-1
Staphylococcus aureus
GCA_036532215.1ContigJASVBL000000000SAMN35664449
AFSPU3400-1
Staphylococcus aureus
GCA_036532195.1ContigJASVBI000000000SAMN35664452
AFSW3423-1
Staphylococcus aureus
GCA_036532175.1ContigJASVBH000000000SAMN35664453
AFSPU3461-4
Staphylococcus aureus
GCA_036532155.1ContigJASVBE000000000SAMN35664456
AFSW3485-5
Staphylococcus aureus
GCA_036532135.1ContigJASVBG000000000SAMN35664454
AFSW3461-4
Staphylococcus aureus
GCA_036532115.1ContigJASVBF000000000SAMN35664455
AFSPU3485-1
Staphylococcus aureus
GCA_036532095.1ContigJASVBD000000000SAMN35664457
AFSPU3502-1
Staphylococcus aureus
GCA_036531795.1ContigJASVAO000000000SAMN35664472
AFSW3667-2
Staphylococcus aureus
GCA_036531775.1ContigJASVAM000000000SAMN35664474
AFSW3681-1
Staphylococcus aureus
GCA_036531755.1ContigJASVAN000000000SAMN35664473
AFSPU3681-4
Staphylococcus aureus
GCA_036531735.1ContigJASVAL000000000SAMN35664475
AFSPU3697-4
Staphylococcus aureus
GCA_036528815.1ContigJASUZZ000000000SAMN35664487
AFSPU3813-4
Staphylococcus aureus
GCA_036528885.1ContigJASVAD000000000SAMN35664483
AFSPU3784-1
Staphylococcus aureus
GCA_036528895.1ContigJASVAE000000000SAMN35664482
AFSW3774-4
Staphylococcus aureus
GCA_036528875.1ContigJASVAB000000000SAMN35664485
AFSPU3792-4
Staphylococcus aureus
GCA_036528835.1ContigJASVAA000000000SAMN35664486
AFSW3792-4
Staphylococcus aureus
GCA_036528845.1ContigJASVAC000000000SAMN35664484
AFSW3784-4
Staphylococcus aureus
GCA_036528735.1ContigJASUZY000000000SAMN35664488
AFSW3813-4
Staphylococcus aureus
GCA_036528955.1ContigJASVAF000000000SAMN35664481
AFSPU3774-4
Staphylococcus aureus
GCA_036528935.1ContigJASVAG000000000SAMN35664480
AFSW3749-3
Staphylococcus aureus
GCA_036528985.1ContigJASVAH000000000SAMN35664479
AFSPU3749-5
Staphylococcus aureus
GCA_036528995.1ContigJASVAI000000000SAMN35664478
AFSW3739-1
Staphylococcus aureus
GCA_036528975.1ContigJASVAJ000000000SAMN35664477
AFSPU3739-4
Staphylococcus aureus
GCA_036529035.1ContigJASVAK000000000SAMN35664476
AFSW3697-1
Staphylococcus aureus
GCA_036533415.1ContigJASVDR000000000SAMN35664391
AFSPU3007-1
Staphylococcus aureus
GCA_036533395.1ContigJASVDQ000000000SAMN35664392
AFSW3007-7
Staphylococcus aureus
GCA_036533375.1ContigJASVDP000000000SAMN35664393
AFSPU3011-1
Staphylococcus aureus
GCA_036533355.1ContigJASVDO000000000SAMN35664394
AFSW3011-1
Staphylococcus aureus
GCA_036533335.1ContigJASVDM000000000SAMN35664396
AFSW3014-8
Staphylococcus aureus
GCA_036533315.1ContigJASVDN000000000SAMN35664395
AFSPU3014-15
Staphylococcus aureus
GCA_036533295.1ContigJASVDL000000000SAMN35664397
AFSPU3017-14
Staphylococcus aureus
GCA_036533275.1ContigJASVDK000000000SAMN35664398
AFSW3017-14
Staphylococcus aureus
GCA_036533255.1ContigJASVDJ000000000SAMN35664399
AFSPU3022-1
Staphylococcus aureus
GCA_036533235.1ContigJASVDI000000000SAMN35664400
AFSW3022-3
Staphylococcus aureus
GCA_036533215.1ContigJASVDH000000000SAMN35664401
AFSPU3036-1
Staphylococcus aureus
GCA_036533195.1ContigJASVDG000000000SAMN35664402
AFSW3036-4
Staphylococcus aureus
GCA_036533175.1ContigJASVDF000000000SAMN35664403
AFSPU3039-2
Staphylococcus aureus
GCA_036533155.1ContigJASVDD000000000SAMN35664405
AFSPU3051-4
Staphylococcus aureus
GCA_036533135.1ContigJASVDE000000000SAMN35664404
AFSW3039-1
Staphylococcus aureus
GCA_036533115.1ContigJASVDB000000000SAMN35664407
AFSPU3063-4
Staphylococcus aureus
GCA_036533095.1ContigJASVDC000000000SAMN35664406
AFSW3051-1
Staphylococcus aureus
GCA_036533075.1ContigJASVDA000000000SAMN35664408
AFSW3063-4
Staphylococcus aureus
GCA_036533055.1ContigJASVCY000000000SAMN35664410
AFSW3069-2
Staphylococcus aureus
GCA_036533035.1ContigJASVCZ000000000SAMN35664409
AFSPU3069-3
Staphylococcus aureus
GCA_036533015.1ContigJASVCX000000000SAMN35664411
AFSPU3071-1
Staphylococcus aureus
GCA_036532995.1ContigJASVCW000000000SAMN35664412
AFSW3071-1
Staphylococcus aureus
GCA_036532975.1ContigJASVCV000000000SAMN35664413
AFSPU3108-3
Staphylococcus aureus
GCA_036532955.1ContigJASVCU000000000SAMN35664414
AFSW3108-1
Staphylococcus aureus
GCA_036532935.1ContigJASVCT000000000SAMN35664415
AFSPU3114-1
Staphylococcus aureus
GCA_036532915.1ContigJASVCR000000000SAMN35664417
AFSPU3142-2
Staphylococcus aureus
GCA_036532895.1ContigJASVCS000000000SAMN35664416
AFSW3114-1
Staphylococcus aureus
GCA_036532875.1ContigJASVCQ000000000SAMN35664418
AFSW3142-1
Staphylococcus aureus
GCA_036532855.1ContigJASVCO000000000SAMN35664420
AFSW3147-1
Staphylococcus aureus
GCA_036532835.1ContigJASVCP000000000SAMN35664419
AFSPU3147-4
Staphylococcus aureus
GCA_036532815.1ContigJASVCM000000000SAMN35664422
AFSW3160-1
Staphylococcus aureus
GCA_036532795.1ContigJASVCN000000000SAMN35664421
AFSPU3160-3
Staphylococcus aureus
GCA_036532775.1ContigJASVCL000000000SAMN35664423
AFSPU3171-1
Staphylococcus aureus
GCA_036532755.1ContigJASVCK000000000SAMN35664424
AFSW3171-3
Staphylococcus aureus
GCA_036532735.1ContigJASVCJ000000000SAMN35664425
AFSPU3176-1
Staphylococcus aureus
GCA_036532715.1ContigJASVCH000000000SAMN35664427
AFSPU3198-4
Staphylococcus aureus
GCA_036532695.1ContigJASVCG000000000SAMN35664428
AFSW3198-3
Staphylococcus aureus
GCA_036532675.1ContigJASVCI000000000SAMN35664426
AFSW3176-1
Staphylococcus aureus
GCA_036532655.1ContigJASVCF000000000SAMN35664429
AFSPU3207-1
Staphylococcus aureus
GCA_036532635.1ContigJASVCC000000000SAMN35664432
AFSW3228-1
Staphylococcus aureus
GCA_036532615.1ContigJASVCD000000000SAMN35664431
AFSPU3228-1
Staphylococcus aureus
GCA_036532595.1ContigJASVCE000000000SAMN35664430
AFSW3207-4
Staphylococcus aureus
GCA_036532575.1ContigJASVCB000000000SAMN35664433
AFSPU3235-1
Staphylococcus aureus
GCA_036532555.1ContigJASVCA000000000SAMN35664434
AFSW3235-1
Staphylococcus aureus

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