ID 980407 - BioProject

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Accession: PRJNA980407 ID: 980407

De novo sequencing and analysis for CECT strains in GCM 10K project

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This project is a component of the The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project

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137 additional projects are components of the The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project.

The project aims to sequence and analyse several strain submitted by CECT. Assembly sequence was gained by de novo methods, subsequently regarding annotation information was produced by our genomic analysis pipeline. Further study will be carried out with these data.

Accession	PRJNA980407
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Wu L et al., "The Global Catalogue of Microorganisms (GCM) 10K type strain sequencing project: providing services to taxonomists for standard genome sequencing and annotation.", Int J Syst Evol Microbiol, 2019 Apr;69(4):895-898
Submission	Registration date: 6-Jun-2023 The Institute of Microbiology of the Chinese Academy of Sciences

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	48
Publications
PubMed	1
Other datasets
BioSample	75
Assembly	48

Assembly details:

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Assembly level

Number of Assemblies

Scaffold

Contig

Total

17
31
48

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_030409805.1	JAUFQP000000000	SAMN35653682	CECT 8300	Algibacter miyuki
GCA_030409225.1	JAUFPK000000000	SAMN35653734	CECT 8326	Aquisalimonas lutea
GCA_030409495.1	JAUFQA000000000	SAMN35653715	CECT 8551	Belliella kenyensis
GCA_030409555.1	JAUFPU000000000	SAMN35653723	CECT 7703	Chitinimonas viridis
GCA_030409875.1	JAUFQR000000000	SAMN35653678	CECT 7798	Chryseobacterium tructae
GCA_030409895.1	JAUFQS000000000	SAMN35653676	CECT 7706	Cyclobacterium jeungdonense
GCA_030409905.1	JAUFQT000000000	SAMN35653675	CECT 7682	Echinicola jeungdonensis
GCA_030409685.1	JAUFQJ000000000	SAMN35653704	CECT 8366	Ferruginibacter paludis
GCA_030409845.1	JAUFQQ000000000	SAMN35653679	CECT 7908	Flavobacterium branchiarum
GCA_030409795.1	JAUFQN000000000	SAMN35653685	CECT 8460	Flavobacterium paronense
GCA_030409235.1	JAUFPO000000000	SAMN35653729	CECT 7050	Halomonas almeriensis
GCA_030409305.1	JAUFPQ000000000	SAMN35653727	CECT 5298	Halomonas maura
GCA_030409215.1	JAUFPL000000000	SAMN35653733	CECT 7896	Halomonas ramblicola
GCA_030409265.1	JAUFPM000000000	SAMN35653731	CECT 7246	Halomonas sabkhae
GCA_030409525.1	JAUFQB000000000	SAMN35653714	CECT 7547	Kaistella yonginensis
GCA_030409835.1	JAUFQO000000000	SAMN35653684	CECT 8444	Lutimonas halocynthiae
GCA_030505015.1	JAUKUC000000000	SAMN35653716	CECT 8869	Maribacter confluentis
GCA_030410045.1	JAUFRA000000000	SAMN35653664	CECT 8947	Marivivens donghaensis
GCA_030409435.1	JAUFPX000000000	SAMN35653720	CECT 7069	Methylobacterium adhaesivum
GCA_030409475.1	JAUFPY000000000	SAMN35653719	CECT 7068	Methylobacterium isbiliense
GCA_030409395.1	JAUFPT000000000	SAMN35653724	CECT 7806	Methylobacterium longum
GCA_030409325.1	JAUFPR000000000	SAMN35653726	CECT 8102	Mucilaginibacter aquaedulcis
GCA_030409315.1	JAUFPS000000000	SAMN35653725	CECT 7857	Mucilaginibacter flavus
GCA_030409405.1	JAUFPV000000000	SAMN35653722	CECT 7550	Mucilaginibacter myungsuensis
GCA_030409675.1	JAUFQK000000000	SAMN35653700	CECT 8679	Neolewinella lacunae
GCA_030409925.1	JAUFQU000000000	SAMN35653672	CECT 7184	Paenimyroides ceti
GCA_030409335.1	JAUFPN000000000	SAMN35653730	CECT 7131	Paeniroseomonas aquatica
GCA_030410095.1	JAUFRC000000000	SAMN35653661	CECT 8482	Paracoccus cavernae
GCA_030409415.1	JAUFPW000000000	SAMN35653721	CECT 7114	Pedobacter aquatilis
GCA_030409655.1	JAUFQH000000000	SAMN35653706	CECT 8670	Polaribacter undariae
GCA_030409775.1	JAUFQM000000000	SAMN35653691	CECT 8527	Pontixanthobacter aestiaquae
GCA_030409715.1	JAUFQI000000000	SAMN35653705	CECT 8288	Reinekea marina
GCA_030409115.1	JAUFPJ000000000	SAMN35653735	CECT 7319	Roseateles asaccharophilus
GCA_030410075.1	JAUFRB000000000	SAMN35653663	CECT 8816	Roseibium salinum
GCA_030409605.1	JAUFQG000000000	SAMN35653707	CECT 8570	Simiduia curdlanivorans
GCA_030409725.1	JAUFQL000000000	SAMN35653692	CECT 8656	Thalassotalea ponticola
GCA_030409635.1	JAUFQF000000000	SAMN35653709	CECT 5085	Vibrio agarivorans
GCA_030409995.1	JAUFQY000000000	SAMN35653667	CECT 7226	Vibrio artabrorum
GCA_030410025.1	JAUFQZ000000000	SAMN35653666	CECT 7222	Vibrio breoganii
GCA_030410015.1	JAUFQX000000000	SAMN35653668	CECT 7227	Vibrio cortegadensis
GCA_030409595.1	JAUFQD000000000	SAMN35653711	CECT 7244	Vibrio gallaecicus
GCA_030409755.1	JAUFQE000000000	SAMN35653710	CECT 5110	Vibrio lentus
GCA_030409575.1	JAUFQC000000000	SAMN35653712	CECT 7398	Vibrio ostreicida
GCA_030409975.1	JAUFQW000000000	SAMN35653669	CECT 7298	Vibrio sinaloensis
GCA_030409945.1	JAUFQV000000000	SAMN35653671	CECT 8851	Vibrio tapetis subsp. quintayensis
GCA_030409295.1	JAUFPP000000000	SAMN35653728	CECT 5815	Vreelandella neptunia
GCA_030505025.1	JAUKUB000000000	SAMN35653717	CECT 8979	Winogradskyella maritima
GCA_030409505.1	JAUFPZ000000000	SAMN35653718	CECT 9128	Zunongwangia endophytica

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De novo sequencing and analysis for CECT strains in GCM 10K project

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