ID 942016 - BioProject

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Accession: PRJNA942016 ID: 942016

A novel clinical mNGS-based machine learning model for rapid antimicrobial susceptibility testing of Acinetobacter baumannii

Clinical sequencing isolates data of A. baumanii from the Guangdong Provincial People's Hospital

Accession	PRJNA942016
Data Type	Genome sequencing and assembly
Scope	Multispecies
Publications	Hu X et al., "Novel Clinical mNGS-Based Machine Learning Model for Rapid Antimicrobial Susceptibility Testing of Acinetobacter baumannii.", J Clin Microbiol, 2023 May 23;61(5):e0180522
Submission	Registration date: 7-Mar-2023 Genskey

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (WGS master)	158
Publications
PubMed	1
PMC	1
Other datasets
BioSample	158
Assembly	158

Assembly details:

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Assembly level

Number of Assemblies

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Contig

Total

89
69
158

Assembly	WGS	BioSample	Strain	Taxonomy
GCA_030141485.1	JASIVX000000000	SAMN33621492	1506.236	Acinetobacter baumannii
GCA_030141465.1	JASIUU000000000	SAMN33621463	1404.312	Acinetobacter baumannii
GCA_030141435.1	JASIVI000000000	SAMN33621477	1410.616	Acinetobacter baumannii
GCA_030141405.1	JASIVN000000000	SAMN33621482	1412.725	Acinetobacter baumannii
GCA_030141385.1	JASIVR000000000	SAMN33621486	1502.086	Acinetobacter baumannii
GCA_030141365.1	JASIXH000000000	SAMN33621528	1609.297	Acinetobacter baumannii
GCA_030141335.1	JASIVW000000000	SAMN33621491	1506.227	Acinetobacter baumannii
GCA_030141225.1	JASIYD000000000	SAMN33621550	1801.023	Acinetobacter baumannii
GCA_030141185.1	JASIYQ000000000	SAMN33621563	1906154	Acinetobacter baumannii
GCA_030141165.1	JASIYJ000000000	SAMN33621556	1905108	Acinetobacter baumannii
GCA_030141125.1	JASIYK000000000	SAMN33621557	1905109	Acinetobacter baumannii
GCA_030141135.1	JASIYL000000000	SAMN33621558	1905115	Acinetobacter baumannii
GCA_030141105.1	JASIYM000000000	SAMN33621559	1905119	Acinetobacter baumannii
GCA_030141085.1	JASIYN000000000	SAMN33621560	1905127	Acinetobacter baumannii
GCA_030141065.1	JASIYO000000000	SAMN33621561	1905128	Acinetobacter baumannii
GCA_030141045.1	JASIYP000000000	SAMN33621562	1906143	Acinetobacter baumannii
GCA_030140955.1	JASIYW000000000	SAMN33621569	1907187	Acinetobacter baumannii
GCA_030141005.1	JASIYV000000000	SAMN33621568	1907184	Acinetobacter baumannii
GCA_030140525.1	JASIUH000000000	SAMN33621450	1303.19	Acinetobacter baumannii
GCA_030140495.1	JASIUI000000000	SAMN33621451	1303.205	Acinetobacter baumannii
GCA_030140445.1	JASIUL000000000	SAMN33621454	1303.253	Acinetobacter baumannii
GCA_030140425.1	JASIUM000000000	SAMN33621455	1304.288	Acinetobacter baumannii
GCA_030140385.1	JASIUO000000000	SAMN33621457	1304.345	Acinetobacter baumannii
GCA_030140345.1	JASIUT000000000	SAMN33621462	1404.302	Acinetobacter baumannii
GCA_030140325.1	JASIUV000000000	SAMN33621464	1404.32	Acinetobacter baumannii
GCA_030140255.1	JASIUX000000000	SAMN33621466	1405.367	Acinetobacter baumannii
GCA_030140165.1	JASIVV000000000	SAMN33621490	1506.176	Acinetobacter baumannii
GCA_030140125.1	JASIVU000000000	SAMN33621489	1505.145	Acinetobacter baumannii
GCA_030140105.1	JASIVZ000000000	SAMN33621494	1507.275	Acinetobacter baumannii
GCA_030140055.1	JASIWC000000000	SAMN33621497	1507.293	Acinetobacter baumannii
GCA_030140025.1	JASIWB000000000	SAMN33621496	1507.286	Acinetobacter baumannii
GCA_030139995.1	JASIWD000000000	SAMN33621498	1508.308	Acinetobacter baumannii
GCA_030139965.1	JASIWG000000000	SAMN33621501	1510.386	Acinetobacter baumannii
GCA_030139065.1	JASIZN000000000	SAMN33621586	202040006	Acinetobacter baumannii
GCA_030139045.1	JASIZF000000000	SAMN33621578	201940047	Acinetobacter baumannii
GCA_030139025.1	JASIZG000000000	SAMN33621579	201940049	Acinetobacter baumannii
GCA_030139005.1	JASIZH000000000	SAMN33621580	201940051	Acinetobacter baumannii
GCA_030138985.1	JASIZI000000000	SAMN33621581	201940054	Acinetobacter baumannii
GCA_030138965.1	JASIZJ000000000	SAMN33621582	201940060	Acinetobacter baumannii
GCA_030138915.1	JASIZL000000000	SAMN33621584	201940065	Acinetobacter baumannii
GCA_030138935.1	JASIZM000000000	SAMN33621585	201940068	Acinetobacter baumannii
GCA_030138905.1	JASJAG000000000	SAMN33621605	20214037	Acinetobacter baumannii
GCA_030138885.1	JASIZP000000000	SAMN33621588	202040014	Acinetobacter baumannii
GCA_030138865.1	JASIZO000000000	SAMN33621587	202040007	Acinetobacter baumannii
GCA_030138835.1	JASIZQ000000000	SAMN33621589	202040027	Acinetobacter baumannii
GCA_030138825.1	JASIZR000000000	SAMN33621590	202040029	Acinetobacter baumannii
GCA_030138805.1	JASIZT000000000	SAMN33621592	202040053	Acinetobacter baumannii
GCA_030138785.1	JASIZU000000000	SAMN33621593	202040057	Acinetobacter baumannii
GCA_030138755.1	JASIZS000000000	SAMN33621591	202040030	Acinetobacter baumannii
GCA_030138745.1	JASJAF000000000	SAMN33621604	20214030	Acinetobacter baumannii
GCA_030138725.1	JASJAH000000000	SAMN33621606	20214043	Acinetobacter baumannii
GCA_030139785.1	JASIWO000000000	SAMN33621509	1603.066	Acinetobacter baumannii
GCA_030139765.1	JASIWN000000000	SAMN33621508	1602.03	Acinetobacter baumannii
GCA_030139745.1	JASIWR000000000	SAMN33621512	1605.141	Acinetobacter baumannii
GCA_030139715.1	JASIWT000000000	SAMN33621514	1605.147	Acinetobacter baumannii
GCA_030139665.1	JASIWV000000000	SAMN33621516	1605.16	Acinetobacter baumannii
GCA_030139685.1	JASIWS000000000	SAMN33621513	1605.143	Acinetobacter baumannii
GCA_030139645.1	JASIWW000000000	SAMN33621517	1606.168	Acinetobacter baumannii
GCA_030139615.1	JASIWX000000000	SAMN33621518	1606.173	Acinetobacter baumannii
GCA_030139605.1	JASIWY000000000	SAMN33621519	1606.176	Acinetobacter baumannii
GCA_030139565.1	JASIXL000000000	SAMN33621532	1704.126	Acinetobacter baumannii
GCA_030139575.1	JASIWZ000000000	SAMN33621520	1606.193	Acinetobacter baumannii
GCA_030139925.1	JASIWF000000000	SAMN33621500	1509.365	Acinetobacter baumannii
GCA_030139905.1	JASIWH000000000	SAMN33621502	1510.41	Acinetobacter baumannii
GCA_030139885.1	JASIWK000000000	SAMN33621505	1601.005	Acinetobacter baumannii
GCA_030139855.1	JASIWI000000000	SAMN33621503	1511.437	Acinetobacter baumannii
GCA_030139845.1	JASIWJ000000000	SAMN33621504	1512.481	Acinetobacter baumannii
GCA_030139505.1	JASIXB000000000	SAMN33621522	1607.211	Acinetobacter baumannii
GCA_030139435.1	JASIXN000000000	SAMN33621534	1704.136	Acinetobacter baumannii
GCA_030139375.1	JASIXR000000000	SAMN33621538	1706.194	Acinetobacter baumannii
GCA_030139355.1	JASIXW000000000	SAMN33621543	1709.045	Acinetobacter baumannii
GCA_030139345.1	JASIXS000000000	SAMN33621539	1709.018	Acinetobacter baumannii
GCA_030139305.1	JASIYH000000000	SAMN33621554	1807.28	Acinetobacter baumannii
GCA_030139285.1	JASIYI000000000	SAMN33621555	1808.283	Acinetobacter baumannii
GCA_030139265.1	JASIYR000000000	SAMN33621564	1906158	Acinetobacter baumannii
GCA_030139225.1	JASIZC000000000	SAMN33621575	201940037	Acinetobacter baumannii
GCA_030139235.1	JASIYS000000000	SAMN33621565	1906164	Acinetobacter baumannii
GCA_030139195.1	JASIYT000000000	SAMN33621566	1906172	Acinetobacter baumannii
GCA_030139185.1	JASIYZ000000000	SAMN33621572	201940017	Acinetobacter baumannii
GCA_030139165.1	JASIYU000000000	SAMN33621567	1906173	Acinetobacter baumannii
GCA_030139145.1	JASIYX000000000	SAMN33621570	1907188	Acinetobacter baumannii
GCA_030139115.1	JASIZB000000000	SAMN33621574	201940029	Acinetobacter baumannii
GCA_030139105.1	JASIZD000000000	SAMN33621576	201940040	Acinetobacter baumannii
GCA_030137515.1	JASIVE000000000	SAMN33621473	1407.5	Acinetobacter baumannii
GCA_030137505.1	JASIVF000000000	SAMN33621474	1408.512	Acinetobacter baumannii
GCA_030137465.1	JASIVH000000000	SAMN33621476	1409.57	Acinetobacter baumannii
GCA_030137435.1	JASIVJ000000000	SAMN33621478	1410.626	Acinetobacter baumannii
GCA_030137355.1	JASIVL000000000	SAMN33621480	1411.643	Acinetobacter baumannii
GCA_030137285.1	JASIVT000000000	SAMN33621488	1505.138	Acinetobacter baumannii
GCA_030137275.1	JASIXC000000000	SAMN33621523	1607.215	Acinetobacter baumannii
GCA_030137265.1	JASIXY000000000	SAMN33621545	1710.338	Acinetobacter baumannii
GCA_030137225.1	JASIYB000000000	SAMN33621548	1712.373	Acinetobacter baumannii
GCA_030137205.1	JASIXG000000000	SAMN33621527	1609.27	Acinetobacter baumannii
GCA_030137185.1	JASIXE000000000	SAMN33621525	1608.251	Acinetobacter baumannii
GCA_030136865.1	JASJAC000000000	SAMN33621601	20214008	Acinetobacter baumannii
GCA_030136845.1	JASJAD000000000	SAMN33621602	20214021	Acinetobacter baumannii
GCA_030136825.1	JASJAE000000000	SAMN33621603	20214026	Acinetobacter baumannii
GCA_030137145.1	JASIXZ000000000	SAMN33621546	1711.344	Acinetobacter baumannii
GCA_030137125.1	JASIYA000000000	SAMN33621547	1711.36	Acinetobacter baumannii
GCA_030137085.1	JASIYE000000000	SAMN33621551	1801.027	Acinetobacter baumannii
GCA_030137065.1	JASIYG000000000	SAMN33621553	1806.245	Acinetobacter baumannii
GCA_030137045.1	JASIYY000000000	SAMN33621571	1907194	Acinetobacter baumannii
GCA_030137015.1	JASIZV000000000	SAMN33621594	202040065	Acinetobacter baumannii
GCA_030137005.1	JASIZA000000000	SAMN33621573	201940020	Acinetobacter baumannii
GCA_030136945.1	JASIZW000000000	SAMN33621595	20204027	Acinetobacter baumannii
GCA_030136925.1	JASIZZ000000000	SAMN33621598	2021113	Acinetobacter baumannii
GCA_030136905.1	JASJAB000000000	SAMN33621600	20214001	Acinetobacter baumannii
GCA_030140245.1	JASIUZ000000000	SAMN33621468	1406.414	Acinetobacter haemolyticus
GCA_030140225.1	JASIVA000000000	SAMN33621469	1406.423	Acinetobacter nosocomialis
GCA_030140375.1	JASIUS000000000	SAMN33621461	1305.405	Acinetobacter nosocomialis
GCA_030140085.1	JASIVY000000000	SAMN33621493	1507.253	Acinetobacter nosocomialis
GCA_030140145.1	JASIVD000000000	SAMN33621472	1407.49	Acinetobacter nosocomialis
GCA_030140465.1	JASIUJ000000000	SAMN33621452	1303.209	Acinetobacter nosocomialis
GCA_030141235.1	JASIXU000000000	SAMN33621541	1709.027	Acinetobacter nosocomialis
GCA_030141425.1	JASIUW000000000	SAMN33621465	1405.341	Acinetobacter nosocomialis
GCA_030141535.1	JASIUN000000000	SAMN33621456	1304.341	Acinetobacter nosocomialis
GCA_030137345.1	JASIVP000000000	SAMN33621484	1501.057	Acinetobacter nosocomialis
GCA_030137325.1	JASIVQ000000000	SAMN33621485	1501.065	Acinetobacter nosocomialis
GCA_030139075.1	JASIZE000000000	SAMN33621577	201940041	Acinetobacter nosocomialis
GCA_030139775.1	JASIWQ000000000	SAMN33621511	1605.13	Acinetobacter nosocomialis
GCA_030139485.1	JASIXM000000000	SAMN33621533	1704.133	Acinetobacter nosocomialis
GCA_030139675.1	JASIWU000000000	SAMN33621515	1605.155	Acinetobacter nosocomialis
GCA_030136885.1	JASJAA000000000	SAMN33621599	2021122	Acinetobacter nosocomialis
GCA_030137385.1	JASIVO000000000	SAMN33621483	1501.014	Acinetobacter nosocomialis
GCA_030137105.1	JASIYC000000000	SAMN33621549	1712.375	Acinetobacter nosocomialis
GCA_030177255.1	JASIXQ000000000	SAMN33621537	1704.158	Acinetobacter nosocomialis
GCA_030136985.1	JASIZX000000000	SAMN33621596	20204030	Acinetobacter pittii
GCA_030136955.1	JASIZY000000000	SAMN33621597	20204032	Acinetobacter pittii
GCA_030139545.1	JASIXA000000000	SAMN33621521	1607.204	Acinetobacter pittii
GCA_030139515.1	JASIXF000000000	SAMN33621526	1609.271	Acinetobacter pittii
GCA_030139465.1	JASIXJ000000000	SAMN33621530	1703.075	Acinetobacter pittii
GCA_030139425.1	JASIXO000000000	SAMN33621535	1704.143	Acinetobacter pittii
GCA_030139825.1	JASIWM000000000	SAMN33621507	1602.027	Acinetobacter pittii
GCA_030139405.1	JASIXP000000000	SAMN33621536	1704.151	Acinetobacter pittii
GCA_030139325.1	JASIXV000000000	SAMN33621542	1709.041	Acinetobacter pittii
GCA_030137475.1	JASIVG000000000	SAMN33621475	1408.542	Acinetobacter pittii
GCA_030137405.1	JASIVK000000000	SAMN33621479	1410.634	Acinetobacter pittii
GCA_030137165.1	JASIXX000000000	SAMN33621544	1710.317	Acinetobacter pittii
GCA_030137245.1	JASIXD000000000	SAMN33621524	1608.249	Acinetobacter pittii
GCA_030141525.1	JASIUP000000000	SAMN33621458	1304.348	Acinetobacter pittii
GCA_030141505.1	JASIUQ000000000	SAMN33621459	1305.397	Acinetobacter pittii
GCA_030141325.1	JASIWP000000000	SAMN33621510	1605.125	Acinetobacter pittii
GCA_030141285.1	JASIXI000000000	SAMN33621529	1702.049	Acinetobacter pittii
GCA_030141295.1	JASIXK000000000	SAMN33621531	1703.111	Acinetobacter pittii
GCA_030141195.1	JASIYF000000000	SAMN33621552	1804.111	Acinetobacter pittii
GCA_030141245.1	JASIXT000000000	SAMN33621540	1709.019	Acinetobacter pittii
GCA_030139935.1	JASIWL000000000	SAMN33621506	1602.025	Acinetobacter pittii
GCA_030139985.1	JASIWE000000000	SAMN33621499	1508.319	Acinetobacter pittii
GCA_030140035.1	JASIWA000000000	SAMN33621495	1507.285	Acinetobacter pittii
GCA_030140365.1	JASIUR000000000	SAMN33621460	1305.398	Acinetobacter pittii
GCA_030140305.1	JASIUY000000000	SAMN33621467	1405.39	Acinetobacter pittii
GCA_030140285.1	JASIVM000000000	SAMN33621481	1411.668	Acinetobacter pittii
GCA_030140205.1	JASIVB000000000	SAMN33621470	1407.448	Acinetobacter pittii
GCA_030140185.1	JASIVC000000000	SAMN33621471	1407.498	Acinetobacter pittii
GCA_030140485.1	JASIUK000000000	SAMN33621453	1303.244	Acinetobacter pittii
GCA_030140535.1	JASIUG000000000	SAMN33621449	1302.118	Acinetobacter pittii
GCA_030140985.1	JASIZK000000000	SAMN33621583	201940064	Acinetobacter pittii
GCA_030137415.1	JASIVS000000000	SAMN33621487	1504.13	Acinetobacter seifertii

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A novel clinical mNGS-based machine learning model for rapid antimicrobial susceptibility testing of Acinetobacter baumannii

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