ID 934404 - BioProject

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Accession: PRJNA934404 ID: 934404

Human vaginal bacterial isolates genome sequencing and assembly

The goal of this work was to obtain complete, closed genomes of human vaginal isolates.

Accession	PRJNA934404
Data Type	Genome sequencing
Scope	Multispecies
Publications	Whidbey C et al., "Complete Genome Sequences of 37 Bacteria from the Human Vaginal Tract.", Microbiol Resour Announc, 2023 Jun 20;12(6):e0035823
Submission	Registration date: 13-Feb-2023 Seattle University
Relevance	Medical

Project Data:

Resource Name	Number of Links
Sequence data
Nucleotide (Genomic DNA)	66
SRA Experiments	37
Protein Sequences	78823
Publications
PubMed	1
PMC	1
Other datasets
BioSample	37
Assembly	36

Assembly details:

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Assembly level

Number of Assemblies

Complete genome

Total

36
36

Assembly	Chrs	BioSample	Strain	Taxonomy
GCA_029011845.1	1	SAMN33275430	VSI03	Aerococcus christensenii
GCA_029011515.1	1	SAMN33275447	VSI20	Bifidobacterium bifidum
GCA_029011725.1	1	SAMN33275438	VSI11	Bifidobacterium breve
GCA_029011255.1	2	SAMN33275456	VSI48	Enterococcus faecalis
GCA_029011395.1	3	SAMN33275452	VSI36	Enterococcus faecalis
GCA_029011535.1	4	SAMN33275446	VSI19	Enterococcus faecalis
GCA_029011745.1	2	SAMN33275436	VSI09	Enterococcus faecalis
GCA_029010255.1	1	SAMN33275463	VSI33	Lacticaseibacillus rhamnosus
GCA_029011275.1	3	SAMN33275455	VSI43	Lacticaseibacillus rhamnosus
GCA_029011595.1	1	SAMN33275444	VSI17	Lactobacillus crispatus
GCA_029011495.1	2	SAMN33275448	VSI21	Lactobacillus crispatus
GCA_029011475.1	2	SAMN33275449	VSI24	Lactobacillus crispatus
GCA_029011765.1	1	SAMN33275435	VSI08	Lactobacillus crispatus
GCA_029011155.1	1	SAMN33275431	VSI04	Lactobacillus crispatus
GCA_029010235.1	3	SAMN33275462	VSI47	Lactobacillus gasseri
GCA_029011805.1	2	SAMN33275433	VSI06	Lactobacillus gasseri
GCA_029011785.1	2	SAMN33275434	VSI07	Lactobacillus gasseri
GCA_029011455.1	2	SAMN33275450	VSI26	Lactobacillus gasseri
GCA_029011575.1	1	SAMN33275445	VSI18	Lactobacillus mulieris
GCA_029011825.1	1	SAMN33275432	VSI05	Limosilactobacillus fermentum
GCA_029011215.1	2	SAMN33275458	VSI56	Staphylococcus aureus
GCA_029011415.1	5	SAMN33275451	VSI35	Staphylococcus haemolyticus
GCA_029011195.1	1	SAMN33275459	VSI63	Streptococcus agalactiae
GCA_029011675.1	1	SAMN33275441	VSI14	Streptococcus agalactiae
GCA_029011635.1	1	SAMN33275442	VSI15	Streptococcus agalactiae
GCA_029011615.1	1	SAMN33275443	VSI16	Streptococcus anginosus
GCA_029011695.1	1	SAMN33275440	VSI13	Streptococcus anginosus
GCA_029011905.1	1	SAMN33275465	VSI68	Streptococcus anginosus
GCA_029012025.1	1	SAMN33275439	VSI12	Streptococcus anginosus
GCA_029011295.1	1	SAMN33275454	VSI40	Streptococcus anginosus
GCA_029011355.1	3	SAMN33275453	VSI37	Streptococcus anginosus
GCA_029011235.1	2	SAMN33275457	VSI52	Streptococcus anginosus
GCA_029010215.1	1	SAMN33275464	VSI67	Streptococcus anginosus
GCA_029010275.1	2	SAMN33275461	VSI85	Streptococcus anginosus
GCA_029011885.1	1	SAMN33275429	VSI01	Winkia neuii
GCA_029011175.1	1	SAMN33275437	VSI10	Winkia neuii

SRA Data Details

Parameter	Value
Data volume, Gbases	14
Data volume, Mbytes	13522

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Human vaginal bacterial isolates genome sequencing and assembly

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