mouse RNA-seq, human RNA-seq, ATAC-seq, and scRNA-... (ID 932220) - BioProject

Format

Choose Destination

Accession: PRJNA932220 ID: 932220

mouse RNA-seq, human RNA-seq, ATAC-seq, and scRNA-seq analyses data

This SuperSeries is composed of the SubSeries listed below. Overall design: Refer to individual Series

Accession	PRJNA932220; GEO: GSE224702
Type	Umbrella project
Publications	Ikeda N et al., "The early neutrophil-committed progenitors aberrantly differentiate into immunoregulatory monocytes during emergency myelopoiesis.", Cell Rep, 2023 Mar 28;42(3):112165
Submission	Registration date: 7-Feb-2023 Immune Regulation, Life Sciences, Tokyo University of Pharmacy and Life Sciences
Relevance	Superseries

Project Data:

Parameter	Value
Data volume, Supplementary Mbytes	59

Parameter	Value
Data volume, Gbases	305
Data volume, Mbytes	91515

mouse RNA-seq, human RNA-seq, ATAC-seq, and scRNA-seq analyses data encompasses the following 4 sub-projects:

Project Type

Number of Projects

Epigenomics

BioProject accession	Organism	Title
PRJNA929906	Mus musculus	The chromatin structures of GMP-MoPs are shifted toward ones that favors an aberrant differentiation pathway generating GMP-MoPs from proNeu1 [ATAC-seq] (Immune Regulation, Life Sciences,...)

Transcriptome or Gene expression

BioProject accession	Organism	Title
PRJNA929905	Homo sapiens	Human CXCR1+CD14+ monocytes are characterized by neutrophil-associated gene expression [RNA-seq human] (Immune Regulation, Life Sciences,...)
PRJNA934487	Mus musculus	GMP-MoPs can be classified as an independent cell type that differentiate from GMPs through proNeu1 without going through the MDP-cMoP pathway [scRNA-seq] (Immune Regulation, Life Sciences,...)
PRJNA929908	Mus musculus	GMP-MoPs display mixed gene expression profiles of both neutrophil and monocyte progenitors [RNAseq mouse] (Immune Regulation, Life Sciences,...)