U.S. flag

An official website of the United States government

Display Settings:

Format

Send to:

Choose Destination
Accession: PRJEB58940 ID: 923967

odSpoLacu

Spongilla lacustris

See Genome Information for Spongilla lacustris
This project collects the sequencing data and assemblies generated for Spongilla lacustris to facilitate genome assembly and annotation as part of the Aquatic Symbiosis Genomics (ASG) Project (https://www.aquaticsymbiosisgenomics.org/) from samples supplied by the ASG Sponges-as-Symbiont Hub (https://www.aquaticsymbiosisgenomics.org/collaborators/the-genomic-basis-of-sponge-microbe-symbioses/). The data under this project are made available subject to the Tree of Life Open Data Release Policy (https://www.darwintreeoflife.org/project-resources/).
AccessionPRJEB58940
TypeUmbrella project
OrganismSpongilla lacustris[Taxonomy ID: 6055]
Eukaryota; Metazoa; Porifera; Demospongiae; Heteroscleromorpha; Spongillida; Spongillidae; Spongilla; Spongilla lacustris
SubmissionRegistration date: 15-Jan-2023
WELLCOME SANGER INSTITUTE
Project Data:
Resource NameNumber
of Links
Sequence data
Nucleotide (total)49
WGS master5
Genomic DNA44
SRA Experiments11
Other datasets
BioSample11
Assembly7
SRA Data Details
ParameterValue
Data volume, Gbases366
Data volume, Tbytes0.11
odSpoLacu encompasses the following 11 sub-projects:
Project TypeNumber of Projects
Genome sequencing
Highest level of assembly :
Complete genome
Chromosomes
Scaffolds
Contigs
Total

1
2
1
1
5
BioProject
accession
Assembly
level
OrganismTitle
PRJEB63574 ChromosomesChoricystis sp. odSpoLacu1Choricystis sp. odSpoLacu1 genome assembly, ucChoSpea1 (WELLCOME SANGER INSTITUTE)
PRJEB63575 ContigsChoricystis sp. odSpoLacu1Choricystis sp. odSpoLacu1 genome assembly, ucChoSpea1, alternate haplotype (WELLCOME SANGER INSTITUTE)
PRJEB60359 ScaffoldsSpongilla lacustrisSpongilla lacustris genome assembly, odSpoLacu1, alternate haplotype (WELLCOME SANGER INSTITUTE)
PRJEB60358 ChromosomesSpongilla lacustrisSpongilla lacustris genome assembly, odSpoLacu1 (WELLCOME SANGER INSTITUTE)
PRJEB62663 Complete genomesponge metagenomesponge metagenome genome assembly, odSpoLacu1.metagenome (WELLCOME SANGER INSTITUTE)
Other6
BioProject
accession
OrganismTitle
PRJEB62771Caulobacter vibrioidesCaulobacter vibrioides genome assembly, odSpoLacu1.Caulobacter_vibrioides_1 (WELLCOME SANGER INSTITUTE)
PRJEB58939Spongilla lacustrisSpongilla lacustris, genomic and transcriptomic data (WELLCOME SANGER INSTITUTE)
PRJEB62714uncultured Flavobacterium sp.uncultured Flavobacterium sp. genome assembly, odSpoLacu1.Flavobacterium_sp_1 (WELLCOME SANGER INSTITUTE)
PRJEB62710uncultured Pseudoduganella sp.uncultured Pseudoduganella sp. genome assembly, odSpoLacu1.Pseudoduganella_sp_1 (WELLCOME SANGER INSTITUTE)
PRJEB62711uncultured Sphingomonas sp.uncultured Sphingomonas sp. genome assembly, odSpoLacu1.Sphingomonas_sp_1 (WELLCOME SANGER INSTITUTE)
List all 6 'Other' projects...

Supplemental Content

Recent activity

Your browsing activity is empty.

Activity recording is turned off.

Turn recording back on

See more...
Support Center